Merge pull request #41 from Knowledge-Graph-Hub/compress_uploads

Output transformed nodes+edges to .tar.gz
Knowledge-Graph-Hub · Sep 14, 2021 · 21e4d9a · 21e4d9a
2 parents ecfa911 + 6a1eb45
commit 21e4d9a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/kg_obo/transform.py b/kg_obo/transform.py
@@ -74,7 +74,8 @@ def kgx_transform(input_file: list, input_format: str,
         kgx.cli.transform(inputs=input_file,
                           input_format=input_format,
                           output=output_file,
-                          output_format=output_format)
+                          output_format=output_format,
+                          output_compression="tar.gz")
         if hasattr(logger, "_cache") and 30 in logger._cache and logger._cache[30]:  # type: ignore
             logger.error("Encountered errors in transforming or parsing.")  # type: ignore
             errors = True