Scripts for paper "Recent declines in salmon body size impact ecosystems and fisheries"
SASAP Size Declines working group.
Authors who have contributed to these scripts include: Krista Oke, Curry Cunningham, Katie Kobayashi, Jared Kibele, Steve Munch
| Directory | Description |
|---|---|
| get_ASL_data_archive | Functions to extract and summarize data from the master dataset. Summary files are created and distributed to /Data folder. |
| Linking-Covariates-to-Data_archive | links covariate data to salmon age-length data, outputs and distributes summary files |
| linear_year_effect_keepdeltas_archive | summarizes salmon size data to creates dataset analyzed for consequences analyses |
| Compare_Linear_Year_Effect_archive | summarizes salmon size data to create datasets analyzes and plotted elsewhere |
| allsps_oneGAM_archive | General additive model containing all species |
| Drivers-Analysis_archive | heirarchical Bayesian analyses on potential drivers of salmon size decline |
| Drivers-Plot_archive | plots results of drivers analysis |
| Soc_cons_archive | estimates some social consequences of size declines |
| eco_cons_archive | estimates some ecological consequences of size declines |
| econ_cons_archive | estimates some economic consequences of size declines |
| chain_rule_analytical_archive | Conducts chain rule analysis |