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🎨🐚 Add bash-implementations of Autometa workflows #202

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merged 15 commits into from
Jan 6, 2022

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  • Add bash workflow of autometa pipeline
  • Add bash workflow of autometa-large-data-mode pipeline

This removes any dependency of running the pipeline with nextflow and provides the user with a template to construct their own autometa workflow with some comments for post-processing with CheckM and GTDB-Tk. autometa-binning-summary is also used to generate the binning output summary tables and bins' fasta files

@evanroyrees evanroyrees added the enhancement New feature or request label Dec 3, 2021
@evanroyrees evanroyrees merged commit 12eda38 into KwanLab:dev Jan 6, 2022
@evanroyrees evanroyrees deleted the bash-wfs branch January 20, 2022 17:30
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