🐛 🎨 🍏 Fix kingdom-handling and mounting NCBI databases into docker container #229
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🎨🍏 Add working version of using either bacteria or archaea based on params.kingdom
Codecov Report
@@ Coverage Diff @@
## dev #229 +/- ##
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+ Coverage 27.36% 27.53% +0.17%
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Files 45 45
Lines 5314 5331 +17
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+ Hits 1454 1468 +14
- Misses 3860 3863 +3
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…ine in binning_summary.nf
🎨✅ Fix test for unclustered_recruitment.py 🎨🐛🍏🐍 Re-write unclustered recruitment features table to output-features and main to output-main 🎨🐍🐛 Incorrect cluster col usage in get_metabin_stats for binnin/summary.py 🎨🍏 Rename bin_contigs.nf to binning.nf 🎨🍏 Update tags for kmers, binning and recruitment 🎨🐍 Update kmers main behavior so kmer pipeline may be run at multiple different stages 🎨🍏 Update modules.config for new local kmer and binning processes
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Jan 28, 2022
🔥✅ Remove unnecessary import
…binning.nf ✅ Add test for raising a TableFormatError 🍏 Add errorStrategy to binning.nf to ignore the 204 error 🐍🎨 Add sys.exit(204) exit code when raising a BinninError or TableFormatError for recursive_dbscan.py
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BINNING_SUMMARYprocess