ππ¨β¬οΈπ₯ update build files and respective docs #234
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π₯ remove requirements.txt π₯ Remove bioconda recipe meta.yaml π Update docs for nextflow-env.yml β¬οΈ Rename environment.yml to nextflow-env.yml β¬οΈ Add autometa-env.yml (conda env) to replace requirements.txt (pip requirements file) π¨ Change Makefile create_environment command to use autometa-env.yml π Change installation directions to correspond to autometa-env.yml rather than requirements.txt
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π₯ Reduced build matrix to one os and one python version ππ Added names for downloading test data and running pytest ππ update conda env explicitly to base (without specifying -n base an 'autometa' env is created
π¨π Add tests/environment.yml for pytest/codecov github action
π Add full command for building docker image in installation docs
Codecov Report
@@ Coverage Diff @@
## main #234 +/- ##
==========================================
- Coverage 27.68% 27.64% -0.05%
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Files 45 45
Lines 5339 5336 -3
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- Hits 1478 1475 -3
Misses 3861 3861
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π₯ remove
requirements.txtπ₯ Remove bioconda recipe
meta.yamlπ Update docs for
nextflow-env.ymlβ¬οΈ Rename
environment.ymltonextflow-env.ymlβ¬οΈ Add
autometa-env.yml(conda env) to replacerequirements.txt(pip requirements file)π¨ Change
Makefile create_environmentcommand to useautometa-env.ymlπ Change installation directions to correspond to
autometa-env.ymlrather thanrequirements.txt