Update nextflow-workflow.rst #238
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Quick start instructions added :) Please confirm that format is acceptable! It also won't let me upload the images so I've sent those to you (Evan) via Slack. let me know if they need to be sent to someone else for upload.
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evanroyrees
requested changes
Feb 15, 2022
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There are a few formatting errors, but I think this will really make running autometa using nextflow much more approachable!
To display the screenshots you would like to include, you will need to commit these to your pull request as well. Please place these in the same folder as other images hosted for the documentation ($HOME/Autometa/docs/img) and link to them appropriately.
Co-authored-by: Evan Rees <25933122+WiscEvan@users.noreply.github.com>
Co-authored-by: Evan Rees <25933122+WiscEvan@users.noreply.github.com>
evanroyrees
reviewed
Feb 15, 2022
- Fix broken cross-ref - Fix formatting errors - Fix typos - Add unordered list of KwanLab/Autometa nf-core parameter settings - Add/Move some sections into note blocks - Add custom anchors for each KwanLab/Autometa nf-core parameter setting
evanroyrees
reviewed
Feb 16, 2022
- 📝 Add headers for running Autometa section of quickstart - 📝🔥 Fix errors in formatting for code blocks and incorrect indents - Add N50 for example assembly in Binning parameters section
- 📝🐛 fix ref where a colon was missing causing a broken cross reference. - 📝🔥 Remove incorrect indentation causing incorrect bold in Additional Autometa parameters section
evanroyrees
approved these changes
Feb 16, 2022
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Quick start instructions added :) Please confirm that format is acceptable! It also won't let me upload the images so I've sent those to you (Evan) via Slack. let me know if they need to be sent to someone else for upload.
PR checklist
nf-core lint .).nextflow run . -profile test,docker).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).