forked from spack/spack
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Check in entire Trilinos file for review.
- Loading branch information
Showing
2 changed files
with
359 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,347 @@ | ||
############################################################################## | ||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. | ||
# Produced at the Lawrence Livermore National Laboratory. | ||
# | ||
# This file is part of Spack. | ||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. | ||
# LLNL-CODE-647188 | ||
# | ||
# For details, see https://github.com/llnl/spack | ||
# Please also see the LICENSE file for our notice and the LGPL. | ||
# | ||
# This program is free software; you can redistribute it and/or modify | ||
# it under the terms of the GNU Lesser General Public License (as | ||
# published by the Free Software Foundation) version 2.1, February 1999. | ||
# | ||
# This program is distributed in the hope that it will be useful, but | ||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF | ||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and | ||
# conditions of the GNU Lesser General Public License for more details. | ||
# | ||
# You should have received a copy of the GNU Lesser General Public | ||
# License along with this program; if not, write to the Free Software | ||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA | ||
############################################################################## | ||
from spack import * | ||
import os | ||
import sys | ||
|
||
# Trilinos is complicated to build, as an inspiration a couple of links to | ||
# other repositories which build it: | ||
# https://github.com/hpcugent/easybuild-easyblocks/blob/master/easybuild/easyblocks/t/trilinos.py#L111 | ||
# https://github.com/koecher/candi/blob/master/deal.II-toolchain/packages/trilinos.package | ||
# https://gitlab.com/configurations/cluster-config/blob/master/trilinos.sh | ||
# https://github.com/Homebrew/homebrew-science/blob/master/trilinos.rb and some | ||
# relevant documentation/examples: | ||
# https://github.com/trilinos/Trilinos/issues/175 | ||
|
||
|
||
class Trilinos(Package): | ||
"""The Trilinos Project is an effort to develop algorithms and enabling | ||
technologies within an object-oriented software framework for the solution | ||
of large-scale, complex multi-physics engineering and scientific problems. | ||
A unique design feature of Trilinos is its focus on packages. | ||
""" | ||
homepage = "https://trilinos.org/" | ||
base_url = "https://github.com/trilinos/Trilinos/archive" | ||
|
||
version('12.8.1', '01c0026f1e2050842857db941060ecd5') | ||
version('12.6.4', 'c2ea7b5aa0d10bcabdb9b9a6e3bac3ea') | ||
version('12.6.3', '8de5cc00981a0ca0defea6199b2fe4c1') | ||
version('12.6.2', 'dc7f9924872778798149ecadd81605a5') | ||
version('12.6.1', '8aecea78546e7558f63ecc9a3b2949da') | ||
version('12.4.2', '4c25a757d86bde3531090bd900a2cea8') | ||
version('12.2.1', '85d011f7f99a776a9c6c2625e8cb721c') | ||
version('12.0.1', 'bcb3fdefd14d05dd6aa65ba4c5b9aa0e') | ||
version('11.14.3', 'dea62e57ebe51a886bee0b10a2176969') | ||
version('11.14.2', 'e7c3cdbbfe3279a8a68838b873ad6d51') | ||
version('11.14.1', 'b7760b142eef66c79ed13de7c9560f81') | ||
|
||
def url_for_version(self, version): | ||
return '%s/trilinos-release-%s.tar.gz' % \ | ||
(Trilinos.base_url, version.dashed) | ||
|
||
variant('metis', default=True, | ||
description='Compile with METIS and ParMETIS') | ||
variant('mumps', default=True, | ||
description='Compile with support for MUMPS solvers') | ||
variant('superlu-dist', default=True, | ||
description='Compile with SuperluDist solvers') | ||
variant('hypre', default=True, | ||
description='Compile with Hypre preconditioner') | ||
variant('hdf5', default=True, description='Compile with HDF5') | ||
variant('suite-sparse', default=True, | ||
description='Compile with SuiteSparse solvers') | ||
# not everyone has py-numpy activated, keep it disabled by default to avoid | ||
# configure errors | ||
variant('python', default=False, description='Build python wrappers') | ||
variant('shared', default=True, | ||
description='Enables the build of shared libraries') | ||
variant('debug', default=False, | ||
description='Builds a debug version of the libraries') | ||
variant('boost', default=True, description='Compile with Boost') | ||
|
||
depends_on('cmake', type='build') | ||
|
||
# Everything should be compiled with -fpic | ||
depends_on('blas') | ||
depends_on('lapack') | ||
depends_on('boost', when='+boost') | ||
depends_on('matio') | ||
depends_on('glm') | ||
depends_on('metis@5:', when='+metis') | ||
depends_on('suite-sparse', when='+suite-sparse') | ||
|
||
# MPI related dependencies | ||
depends_on('mpi') | ||
depends_on('netcdf+mpi') | ||
depends_on('parmetis', when='+metis') | ||
# Trilinos' Tribits config system is limited which makes it very tricky to | ||
# link Amesos with static MUMPS, see | ||
# https://trilinos.org/docs/dev/packages/amesos2/doc/html/classAmesos2_1_1MUMPS.html | ||
# One could work it out by getting linking flags from mpif90 --showme:link | ||
# (or alike) and adding results to -DTrilinos_EXTRA_LINK_FLAGS together | ||
# with Blas and Lapack and ScaLAPACK and Blacs and -lgfortran and it may | ||
# work at the end. But let's avoid all this by simply using shared libs | ||
depends_on('mumps@5.0:+mpi+shared', when='+mumps') | ||
depends_on('scalapack', when='+mumps') | ||
depends_on('superlu-dist@:4.3', when='@:12.6.1+superlu-dist') | ||
depends_on('superlu-dist', when='@12.6.2:+superlu-dist') | ||
depends_on('hypre~internal-superlu', when='+hypre') | ||
depends_on('hdf5+mpi', when='+hdf5') | ||
depends_on('python', when='+python') | ||
depends_on('py-numpy', when='+python') | ||
depends_on('swig', when='+python') | ||
|
||
patch('umfpack_from_suitesparse.patch') | ||
|
||
# check that the combination of variants makes sense | ||
def variants_check(self): | ||
if '+superlu-dist' in self.spec and self.spec.satisfies('@:11.4.3'): | ||
# For Trilinos v11 we need to force SuperLUDist=OFF, since only the | ||
# deprecated SuperLUDist v3.3 together with an Amesos patch is | ||
# working. | ||
raise RuntimeError('The superlu-dist variant can only be used' + | ||
' with Trilinos @12.0.1:') | ||
|
||
def install(self, spec, prefix): | ||
self.variants_check() | ||
|
||
cxx_flags = [] | ||
options = [] | ||
options.extend(std_cmake_args) | ||
|
||
mpi_bin = spec['mpi'].prefix.bin | ||
# Note: -DXYZ_LIBRARY_NAMES= needs semicolon separated list of names | ||
blas = spec['blas'].blas_libs | ||
lapack = spec['lapack'].lapack_libs | ||
options.extend([ | ||
'-DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON', | ||
'-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON', | ||
'-DTrilinos_VERBOSE_CONFIGURE:BOOL=OFF', | ||
'-DTrilinos_ENABLE_TESTS:BOOL=OFF', | ||
'-DTrilinos_ENABLE_EXAMPLES:BOOL=OFF', | ||
'-DCMAKE_BUILD_TYPE:STRING=%s' % ( | ||
'DEBUG' if '+debug' in spec else 'RELEASE'), | ||
'-DBUILD_SHARED_LIBS:BOOL=%s' % ( | ||
'ON' if '+shared' in spec else 'OFF'), | ||
'-DTPL_ENABLE_MPI:BOOL=ON', | ||
'-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix, | ||
'-DTPL_ENABLE_BLAS=ON', | ||
'-DBLAS_LIBRARY_NAMES=%s' % ';'.join(blas.names), | ||
'-DBLAS_LIBRARY_DIRS=%s' % ';'.join(blas.directories), | ||
'-DTPL_ENABLE_LAPACK=ON', | ||
'-DLAPACK_LIBRARY_NAMES=%s' % ';'.join(lapack.names), | ||
'-DLAPACK_LIBRARY_DIRS=%s' % ';'.join(lapack.directories), | ||
'-DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON', | ||
'-DTrilinos_ENABLE_CXX11:BOOL=ON', | ||
'-DTPL_ENABLE_Netcdf:BOOL=ON', | ||
'-DTPL_ENABLE_HYPRE:BOOL=%s' % ( | ||
'ON' if '+hypre' in spec else 'OFF') | ||
]) | ||
|
||
if '+hdf5' in spec: | ||
options.extend([ | ||
'-DTPL_ENABLE_HDF5:BOOL=ON', | ||
'-DHDF5_INCLUDE_DIRS:PATH=%s' % spec['hdf5'].prefix.include, | ||
'-DHDF5_LIBRARY_DIRS:PATH=%s' % spec['hdf5'].prefix.lib | ||
]) | ||
else: | ||
options.extend(['-DTPL_ENABLE_HDF5:BOOL=OFF']) | ||
|
||
if '+boost' in spec: | ||
options.extend([ | ||
'-DTPL_ENABLE_Boost:BOOL=ON', | ||
'-DBoost_INCLUDE_DIRS:PATH=%s' % spec['boost'].prefix.include, | ||
'-DBoost_LIBRARY_DIRS:PATH=%s' % spec['boost'].prefix.lib | ||
]) | ||
else: | ||
options.extend(['-DTPL_ENABLE_Boost:BOOL=OFF']) | ||
|
||
if '+hdf5' in spec: | ||
options.extend([ | ||
'-DTPL_ENABLE_HDF5:BOOL=ON', | ||
'-DHDF5_INCLUDE_DIRS:PATH=%s' % spec['hdf5'].prefix.include, | ||
'-DHDF5_LIBRARY_DIRS:PATH=%s' % spec['hdf5'].prefix.lib | ||
]) | ||
else: | ||
options.extend(['-DTPL_ENABLE_HDF5:BOOL=OFF']) | ||
|
||
# Fortran lib | ||
libgfortran = os.path.dirname(os.popen( | ||
'%s --print-file-name libgfortran.a' % | ||
join_path(mpi_bin, 'mpif90')).read()) | ||
options.extend([ | ||
'-DTrilinos_EXTRA_LINK_FLAGS:STRING=-L%s/ -lgfortran' % ( | ||
libgfortran), | ||
'-DTrilinos_ENABLE_Fortran=ON' | ||
]) | ||
|
||
# for build-debug only: | ||
# options.extend([ | ||
# '-DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE' | ||
# ]) | ||
|
||
# suite-sparse related | ||
if '+suite-sparse' in spec: | ||
options.extend([ | ||
# FIXME: Trilinos seems to be looking for static libs only, | ||
# patch CMake TPL file? | ||
'-DTPL_ENABLE_Cholmod:BOOL=OFF', | ||
# '-DTPL_ENABLE_Cholmod:BOOL=ON', | ||
# '-DCholmod_LIBRARY_DIRS:PATH=%s' % ( | ||
# spec['suite-sparse'].prefix.lib, | ||
# '-DCholmod_INCLUDE_DIRS:PATH=%s' % ( | ||
# spec['suite-sparse'].prefix.include, | ||
'-DTPL_ENABLE_UMFPACK:BOOL=ON', | ||
'-DUMFPACK_LIBRARY_DIRS:PATH=%s' % ( | ||
spec['suite-sparse'].prefix.lib), | ||
'-DUMFPACK_INCLUDE_DIRS:PATH=%s' % ( | ||
spec['suite-sparse'].prefix.include), | ||
'-DUMFPACK_LIBRARY_NAMES=umfpack;amd;colamd;cholmod;' + | ||
'suitesparseconfig' | ||
]) | ||
else: | ||
options.extend([ | ||
'-DTPL_ENABLE_Cholmod:BOOL=OFF', | ||
'-DTPL_ENABLE_UMFPACK:BOOL=OFF', | ||
]) | ||
|
||
# metis / parmetis | ||
if '+metis' in spec: | ||
options.extend([ | ||
'-DTPL_ENABLE_METIS:BOOL=ON', | ||
'-DMETIS_LIBRARY_DIRS=%s' % spec['metis'].prefix.lib, | ||
'-DMETIS_LIBRARY_NAMES=metis', | ||
'-DTPL_METIS_INCLUDE_DIRS=%s' % spec['metis'].prefix.include, | ||
'-DTPL_ENABLE_ParMETIS:BOOL=ON', | ||
'-DParMETIS_LIBRARY_DIRS=%s;%s' % ( | ||
spec['parmetis'].prefix.lib, spec['metis'].prefix.lib), | ||
'-DParMETIS_LIBRARY_NAMES=parmetis;metis', | ||
'-DTPL_ParMETIS_INCLUDE_DIRS=%s' % ( | ||
spec['parmetis'].prefix.include) | ||
]) | ||
else: | ||
options.extend([ | ||
'-DTPL_ENABLE_METIS:BOOL=OFF', | ||
'-DTPL_ENABLE_ParMETIS:BOOL=OFF', | ||
]) | ||
|
||
# mumps / scalapack | ||
if '+mumps' in spec: | ||
options.extend([ | ||
'-DTPL_ENABLE_MUMPS:BOOL=ON', | ||
'-DMUMPS_LIBRARY_DIRS=%s' % spec['mumps'].prefix.lib, | ||
# order is important! | ||
'-DMUMPS_LIBRARY_NAMES=dmumps;mumps_common;pord', | ||
'-DTPL_ENABLE_SCALAPACK:BOOL=ON', | ||
# FIXME: for MKL it's mkl_scalapack_lp64;mkl_blacs_mpich_lp64 | ||
'-DSCALAPACK_LIBRARY_NAMES=scalapack' | ||
]) | ||
# see | ||
# https://github.com/trilinos/Trilinos/blob/master/packages/amesos/README-MUMPS | ||
cxx_flags.extend([ | ||
'-DMUMPS_5_0' | ||
]) | ||
else: | ||
options.extend([ | ||
'-DTPL_ENABLE_MUMPS:BOOL=OFF', | ||
'-DTPL_ENABLE_SCALAPACK:BOOL=OFF', | ||
]) | ||
|
||
# superlu-dist: | ||
if '+superlu-dist' in spec: | ||
# Amesos, conflicting types of double and complex SLU_D | ||
# see | ||
# https://trilinos.org/pipermail/trilinos-users/2015-March/004731.html | ||
# and | ||
# https://trilinos.org/pipermail/trilinos-users/2015-March/004802.html | ||
options.extend([ | ||
'-DTeuchos_ENABLE_COMPLEX:BOOL=OFF', | ||
'-DKokkosTSQR_ENABLE_Complex:BOOL=OFF' | ||
]) | ||
options.extend([ | ||
'-DTPL_ENABLE_SuperLUDist:BOOL=ON', | ||
'-DSuperLUDist_LIBRARY_DIRS=%s' % | ||
spec['superlu-dist'].prefix.lib, | ||
'-DSuperLUDist_INCLUDE_DIRS=%s' % | ||
spec['superlu-dist'].prefix.include | ||
]) | ||
if spec.satisfies('^superlu-dist@4.0:'): | ||
options.extend([ | ||
'-DHAVE_SUPERLUDIST_LUSTRUCTINIT_2ARG:BOOL=ON' | ||
]) | ||
else: | ||
options.extend([ | ||
'-DTPL_ENABLE_SuperLUDist:BOOL=OFF', | ||
]) | ||
|
||
# python | ||
if '+python' in spec: | ||
options.extend([ | ||
'-DTrilinos_ENABLE_PyTrilinos:BOOL=ON' | ||
]) | ||
else: | ||
options.extend([ | ||
'-DTrilinos_ENABLE_PyTrilinos:BOOL=OFF' | ||
]) | ||
|
||
# collect CXX flags: | ||
options.extend([ | ||
'-DCMAKE_CXX_FLAGS:STRING=%s' % (' '.join(cxx_flags)), | ||
]) | ||
|
||
# disable due to compiler / config errors: | ||
options.extend([ | ||
'-DTrilinos_ENABLE_SEACAS=OFF', | ||
'-DTrilinos_ENABLE_Pike=OFF', | ||
'-DTrilinos_ENABLE_STK=OFF' | ||
]) | ||
if sys.platform == 'darwin': | ||
options.extend([ | ||
'-DTrilinos_ENABLE_FEI=OFF' | ||
]) | ||
|
||
with working_dir('spack-build', create=True): | ||
cmake('..', *options) | ||
make() | ||
make('install') | ||
|
||
# When trilinos is built with Python, libpytrilinos is included | ||
# through cmake configure files. Namely, Trilinos_LIBRARIES in | ||
# TrilinosConfig.cmake contains pytrilinos. This leads to a | ||
# run-time error: Symbol not found: _PyBool_Type and prevents | ||
# Trilinos to be used in any C++ code, which links executable | ||
# against the libraries listed in Trilinos_LIBRARIES. See | ||
# https://github.com/Homebrew/homebrew-science/issues/2148#issuecomment-103614509 | ||
# A workaround it to remove PyTrilinos from the COMPONENTS_LIST : | ||
if '+python' in self.spec: | ||
filter_file(r'(SET\(COMPONENTS_LIST.*)(PyTrilinos;)(.*)', | ||
(r'\1\3'), | ||
'%s/cmake/Trilinos/TrilinosConfig.cmake' % | ||
prefix.lib) | ||
|
||
# The shared libraries are not installed correctly on Darwin; | ||
# correct this | ||
if (sys.platform == 'darwin') and ('+shared' in spec): | ||
fix_darwin_install_name(prefix.lib) |
12 changes: 12 additions & 0 deletions
12
var/spack/repos/builtin/packages/trilinos/umfpack_from_suitesparse.patch
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,12 @@ | ||
diff --git a/cmake/TPLs/FindTPLUMFPACK.cmake b/cmake/TPLs/FindTPLUMFPACK.cmake | ||
index 963eb71..998cd02 100644 | ||
--- a/cmake/TPLs/FindTPLUMFPACK.cmake | ||
+++ b/cmake/TPLs/FindTPLUMFPACK.cmake | ||
@@ -55,6 +55,6 @@ | ||
|
||
|
||
TRIBITS_TPL_FIND_INCLUDE_DIRS_AND_LIBRARIES( UMFPACK | ||
- REQUIRED_HEADERS umfpack.h amd.h UFconfig.h | ||
+ REQUIRED_HEADERS umfpack.h amd.h SuiteSparse_config.h | ||
REQUIRED_LIBS_NAMES umfpack amd | ||
) |