LPPtiger2 RC

LPPtiger2 Rlease candidate

Lipostar 2 + LPPtiger2 connection is now fully functional.

LPPtiger 2 Beta

LPPtiger 2

Download .exe for Windows 10 or above (64bit only)

• https://github.com/LMAI-TUD/lpptiger2/releases/download/v2.0-beta/LPPtiger2_win10_x64_exe.zip

Download source code version for macOS (Apple silicon), Linux, and Windows (Win10, Win 11)

• https://github.com/LMAI-TUD/lpptiger2/archive/refs/tags/v2.0-beta.tar.gz
• LPPtiger2 beta is developed using Python 3.10 with Anaconda and PyCharm Pro (Academic license)

Download user guide

• https://github.com/LMAI-TUD/lpptiger2/releases/download/v2.0-beta/LPPtiger2_user_guide.pdf

Download tutorial pack including sample dataset

• https://github.com/LMAI-TUD/lpptiger2/releases/download/v2.0-beta/LPPtiger2_tutorial_pack.zip

About LPPtiger 2

LPPtiger 2 provides you a set of powerful functions to explor epilipidome.

Main functions:

• Prediction of epilipidome

• in silico fragmentation of epilipids

• Generation of inclusion list

• Identify epilipids at discrete level with modification type information

# The connection with Lipostar 2 is currently under development based on previous project

• Currently working connection baes on original LPPtiger: https://github.com/SysMedOs/StarCats
• An upgrade of LPPtiger 2 will be released later to enable the function of Lipostar 2 connection (requires Lipostar 2.02)
• Lipostar is the latest software from Molecular Discovery, developed to assist LC/MS-based lipidomics from the very beginning (direct import of raw data files) to the final goal (lipid identification, statistical analysis, report generation).
• https://www.moldiscovery.com/software/lipostar/

LPPtiger 2 provides user friendly intuitive graphic interface for multiple platforms including macOS (Apple silicon), Linux, and Windows (Win10, Win 11).

License

• Copyright (C) 2021-2022 LMAI_team @ TU Dresden:

  • LMAI_team: Zhixu Ni, Maria Fedorova

• Copyright (C) 2016-2021 SysMedOs_team @ AG Bioanalytik, University of Leipzig:

  • SysMedOs_team: Zhixu Ni, Georgia Angelidou, Maria Fedorova

• LPPtiger2 is Dual-licensed

  • For academic and non-commercial use: AGPL License V3 Please read more information by the following link:

    • [GNU Affero General Public License] (https://www.gnu.org/licenses/agpl-3.0.en.html)

  • For commercial use:

    • Please contact the LMAI_team by email.
    • https://tu-dresden.de/med/mf/zml/forschungsgruppen/fedorova/

• Please cite our publication in an appropriate form:

  • Ni, Zhixu, Georgia Angelidou, Ralf Hoffmann, and Maria Fedorova.
    LPPtiger software for lipidome-specific prediction
    and hunter of oxidized phospholipids from LC-MS datasets
    Scientific Reports 7, Article number: 15138 (2017).
    DOI: 10.1038/s41598-017-15363-z

• For more info please contact:

  • Developer Zhixu Ni: zhixu.ni<at>tu-dresden.de
  • LPPtiger2 repository: https://github.com/LMAI-TUD/lpptiger2

Installation of LPPtiger 2

• Windows .exe excutables

  • download the zip pack

  • unzip it to a folder

  • find the LPPtiger2.exe file

  • simply double click it and the interface will show up

• Run from source code

  • install anaconda with Python 3.9 or 3.10

  • in anaconda enviroment, go to the LPPtiger2 source code folder

  • install requirements using pip install -r ./requirements.txt

  • run LPPtiger 2 python ./LPPtiger2.py

  • the interface will show up