290 automate tutorial build #1093
Workflow file for this run
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name: firecrown-ci | |
on: | |
push: | |
branches: | |
- 'master' | |
pull_request: | |
branches: | |
- '*' | |
schedule: | |
- cron: '47 1 * * *' | |
jobs: | |
firecrown-miniforge: | |
name: Firecrown (${{ matrix.os }}, python-${{ matrix.python-version }}, Miniforge) | |
runs-on: ${{ matrix.os }}-latest | |
strategy: | |
matrix: | |
os: ["ubuntu", "macos"] | |
python-version: ["3.9", "3.10", "3.11"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Setup miniforge | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
activate-environment: firecrown_developer | |
python-version: ${{ matrix.python-version }} | |
miniforge-variant: Mambaforge | |
show-channel-urls: true | |
use-mamba: true | |
- name: Cache date | |
id: get-date | |
run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
shell: bash | |
- name: Cache Conda env | |
uses: actions/cache@v3 | |
with: | |
path: ${{ env.CONDA }}/envs | |
key: miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
env: | |
CACHE_NUMBER: 0 | |
id: cache | |
- name: Update environment | |
run: | | |
conda env update -n firecrown_developer -f environment.yml | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Setting up Firecrown | |
shell: bash -l {0} | |
run: | | |
export FIRECROWN_DIR=${PWD} | |
conda env config vars set FIRECROWN_DIR=${FIRECROWN_DIR} | |
conda activate firecrown_developer | |
pip install --no-deps -e . | |
- name: Setting up CosmoSIS | |
shell: bash -l {0} | |
run: | | |
source ${CONDA_PREFIX}/bin/cosmosis-configure | |
pushd ${CONDA_PREFIX} | |
cosmosis-build-standard-library | |
export CSL_DIR=${PWD}/cosmosis-standard-library | |
conda env config vars set CSL_DIR=${CSL_DIR} | |
conda activate firecrown_developer | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Setting up Cobaya | |
shell: bash -l {0} | |
run: python -m pip install cobaya | |
if: steps.cache.outputs.cache-hit != 'true' | |
- name: Running black check | |
shell: bash -l {0} | |
run: | | |
black --check firecrown | |
black --check tests | |
black --check examples | |
- name: Running flake8 | |
shell: bash -l {0} | |
run: | | |
flake8 firecrown | |
flake8 examples | |
flake8 tests | |
- name: Running mypy | |
shell: bash -l {0} | |
run: | | |
mypy -p firecrown --ignore-missing-imports | |
mypy -p examples --ignore-missing-imports | |
mypy -p tests --ignore-missing-imports | |
- name: Running pylint | |
shell: bash -l {0} | |
run: | | |
pylint --rcfile tests/pylintrc tests | |
pylint firecrown/connector | |
pylint firecrown/*.py | |
pylint firecrown/likelihood/*.py | |
pylint firecrown/likelihood/gauss_family/*.py | |
- name: Running pytest | |
shell: bash -l {0} | |
run: python -m pytest -vv | |
- name: Running example - cosmosis - cosmic-shear | |
shell: bash -l {0} | |
run: | | |
cd examples/cosmicshear | |
python generate_cosmicshear_data.py | |
cosmosis cosmicshear.ini | |
- name: Running example - cosmosis - des-y1-3x2pt | |
shell: bash -l {0} | |
run: | | |
cd examples/des_y1_3x2pt | |
cosmosis des_y1_3x2pt.ini | |
- name: Running example - cosmosis - des-y1-3x2pt-PT | |
shell: bash -l {0} | |
run: | | |
cd examples/des_y1_3x2pt | |
cosmosis des_y1_3x2pt_PT.ini | |
- name: Running example - cobaya - des-y1-3x2pt | |
shell: bash -l {0} | |
run: | | |
cd examples/des_y1_3x2pt | |
cobaya-run cobaya_evaluate.yaml | |
- name: Running example - cobaya - des-y1-3x2pt-PT | |
shell: bash -l {0} | |
run: | | |
cd examples/des_y1_3x2pt | |
cobaya-run cobaya_evaluate_PT.yaml | |
- name: Running example - NumCosmo - des-y1-3x2pt | |
shell: bash -l {0} | |
run: | | |
cd examples/des_y1_3x2pt | |
python numcosmo_run.py | |
- name: Running example - NumCosmo - des-y1-3x2pt-PT | |
shell: bash -l {0} | |
run: | | |
cd examples/des_y1_3x2pt | |
python numcosmo_run_PT.py | |
- name: Running example - cosmosis - srd_sn | |
shell: bash -l {0} | |
run: | | |
cd examples/srd_sn | |
cosmosis sn_srd.ini | |
- name: Running example - NumCosmo - srd_sn | |
shell: bash -l {0} | |
run: | | |
cd examples/srd_sn | |
python numcosmo_run.py | |
- name: Running example - cosmosis - cluster_number_counts | |
shell: bash -l {0} | |
run: | | |
cd examples/cluster_number_counts | |
python generate_rich_mean_mass_sacc_data.py | |
cosmosis cluster_counts_redshift_richness.ini | |
cosmosis cluster_mean_mass_redshift_richness.ini | |
cosmosis cluster_counts_mean_mass_redshift_richness.ini | |
- name: Code coverage | |
if: ${{ (matrix.os == 'ubuntu') && (matrix.python-version == '3.11') }} | |
shell: bash -l {0} | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
run: | | |
python -m pip install --no-input coveralls | |
coverage run --source=firecrown -m pytest tests/ | |
coveralls --service=github | |