Remove FastQ files when no longer needed #328
Redmar-van-den-BergAnnotations
72 warnings
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quick-tests (dry-run)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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quick-tests (dry-run)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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quick-tests (dry-run)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (dry-run)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (dry-run)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (dry-run)
Mamba support is still experimental and can result in differently solved environments!
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quick-tests (scripts)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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quick-tests (scripts)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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quick-tests (scripts)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (scripts)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (scripts)
Mamba support is still experimental and can result in differently solved environments!
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quick-tests (scripts)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (docs)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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quick-tests (docs)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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quick-tests (docs)
Mamba support is still experimental and can result in differently solved environments!
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quick-tests (docs)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (docs)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (docs)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (report)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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quick-tests (report)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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quick-tests (report)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (report)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (report)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (report)
Mamba support is still experimental and can result in differently solved environments!
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quick-tests (sanity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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quick-tests (sanity)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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quick-tests (sanity)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (sanity)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (sanity)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (sanity)
Mamba support is still experimental and can result in differently solved environments!
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quick-tests (utilities)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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quick-tests (utilities)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, eWaterCycle/setup-singularity@v6, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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quick-tests (utilities)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (utilities)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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quick-tests (utilities)
Mamba support is still experimental and can result in differently solved environments!
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quick-tests (utilities)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (qc-seq)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, actions/cache@v2, eWaterCycle/setup-singularity@v6, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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functional-tests (qc-seq)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, actions/cache@v2, eWaterCycle/setup-singularity@v6. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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functional-tests (qc-seq)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (qc-seq)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (qc-seq)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (qc-seq)
Mamba support is still experimental and can result in differently solved environments!
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functional-tests (itd)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, actions/cache@v2, eWaterCycle/setup-singularity@v6, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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functional-tests (itd)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, actions/cache@v2, eWaterCycle/setup-singularity@v6. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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functional-tests (itd)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (itd)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (itd)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (itd)
Mamba support is still experimental and can result in differently solved environments!
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functional-tests (fusion)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, actions/cache@v2, eWaterCycle/setup-singularity@v6, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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functional-tests (fusion)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, actions/cache@v2, eWaterCycle/setup-singularity@v6. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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functional-tests (fusion)
Mamba support is still experimental and can result in differently solved environments!
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functional-tests (fusion)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (fusion)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (fusion)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (snv-indels)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, actions/cache@v2, eWaterCycle/setup-singularity@v6, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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functional-tests (snv-indels)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, actions/cache@v2, eWaterCycle/setup-singularity@v6. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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functional-tests (snv-indels)
Mamba support is still experimental and can result in differently solved environments!
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functional-tests (snv-indels)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (snv-indels)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (snv-indels)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (test-hamlet-targetted-RNA)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, actions/cache@v2, eWaterCycle/setup-singularity@v6, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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functional-tests (test-hamlet-targetted-RNA)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, actions/cache@v2, eWaterCycle/setup-singularity@v6. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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functional-tests (test-hamlet-targetted-RNA)
Mamba support is still experimental and can result in differently solved environments!
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functional-tests (test-hamlet-targetted-RNA)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (test-hamlet-targetted-RNA)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (test-hamlet-targetted-RNA)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (test-hamlet-chrM)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2.3.4, conda-incubator/setup-miniconda@v2, actions/cache@v2, eWaterCycle/setup-singularity@v6, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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functional-tests (test-hamlet-chrM)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2.3.4, actions/cache@v2, eWaterCycle/setup-singularity@v6. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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functional-tests (test-hamlet-chrM)
Mamba support is still experimental and can result in differently solved environments!
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functional-tests (test-hamlet-chrM)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (test-hamlet-chrM)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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functional-tests (test-hamlet-chrM)
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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