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Mendeley API #105

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rudvfaden opened this Issue Mar 2, 2015 · 54 comments

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rudvfaden commented Mar 2, 2015

Journal field missing from Mendeley remote bib

@csch0 csch0 changed the title from Journal field missing from Mendeley remote bib to Mendeley API Mar 2, 2015

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csch0 Mar 2, 2015

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Any special data type?

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csch0 commented Mar 2, 2015

Any special data type?

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rudvfaden Mar 2, 2015

I'm not sure what you mean

rudvfaden commented Mar 2, 2015

I'm not sure what you mean

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Is the journal field always missing or just for specific entry tyre like journal or journal_article?!

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csch0 commented Mar 2, 2015

Is the journal field always missing or just for specific entry tyre like journal or journal_article?!

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rudvfaden Mar 2, 2015

The journal field is always missing

rudvfaden commented Mar 2, 2015

The journal field is always missing

@csch0 csch0 added the bug label Mar 4, 2015

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ntezak Mar 9, 2015

This has been a big problem for me, please fix!

ntezak commented Mar 9, 2015

This has been a big problem for me, please fix!

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minihessel Mar 9, 2015

I only seem to get @misc for webpages, and no "downloaded from" link or date accessed is added. Could this be related to this bug @csch0 ?

minihessel commented Mar 9, 2015

I only seem to get @misc for webpages, and no "downloaded from" link or date accessed is added. Could this be related to this bug @csch0 ?

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csch0 Mar 9, 2015

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Yes both related and fixed in 1.2.9 (release later tonight). Please keep posting here for any other problem

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csch0 commented Mar 9, 2015

Yes both related and fixed in 1.2.9 (release later tonight). Please keep posting here for any other problem

@csch0 csch0 modified the milestone: 1.2.9 Mar 9, 2015

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rudvfaden Mar 9, 2015

The problem persist in version 1.2.9

rudvfaden commented Mar 9, 2015

The problem persist in version 1.2.9

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csch0 Mar 9, 2015

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Did you rebuild your cache?

On 9 Mar 2015, at 21:01, Rud Faden notifications@github.com wrote:

The problem persist in version 1.2.9


Reply to this email directly or view it on GitHub.

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csch0 commented Mar 9, 2015

Did you rebuild your cache?

On 9 Mar 2015, at 21:01, Rud Faden notifications@github.com wrote:

The problem persist in version 1.2.9


Reply to this email directly or view it on GitHub.

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minihessel Mar 9, 2015

@csch0 it fixed many of the entries, but web pages still don't have any links. They only appear like this in remote.bib:

@misc{Benson2009Personal,
author = {Benson, Jim},
title = {Personal Kanban},
year = 2009
}

minihessel commented Mar 9, 2015

@csch0 it fixed many of the entries, but web pages still don't have any links. They only appear like this in remote.bib:

@misc{Benson2009Personal,
author = {Benson, Jim},
title = {Personal Kanban},
year = 2009
}

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rudvfaden Mar 9, 2015

Rebuilding cache made the journal field show up. But it display the publisher and not the journal.

rudvfaden commented Mar 9, 2015

Rebuilding cache made the journal field show up. But it display the publisher and not the journal.

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@minihessel for me a webpage as a link just checked it

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csch0 commented Mar 10, 2015

@minihessel for me a webpage as a link just checked it

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csch0 Mar 10, 2015

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@rudvfaden could you please try the latest testing version?

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csch0 commented Mar 10, 2015

@rudvfaden could you please try the latest testing version?

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minihessel Mar 10, 2015

Did you mean that web page creates a link when you try @csch0 ?

minihessel commented Mar 10, 2015

Did you mean that web page creates a link when you try @csch0 ?

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Yes in the remote.bib I have the following for a website

@misc{Lutz2011Programming,
author = {Lutz, Mark},
keywords = {python programming},
title = {Programming Python: Amazon.co.uk: Mark Lutz: 9780596158101: Books},
url = {http://www.amazon.co.uk/Programming-Python-Mark-Lutz/dp/0596158106},
year = 2011
}

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csch0 commented Mar 10, 2015

Yes in the remote.bib I have the following for a website

@misc{Lutz2011Programming,
author = {Lutz, Mark},
keywords = {python programming},
title = {Programming Python: Amazon.co.uk: Mark Lutz: 9780596158101: Books},
url = {http://www.amazon.co.uk/Programming-Python-Mark-Lutz/dp/0596158106},
year = 2011
}

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minihessel Mar 11, 2015

@csch0 I even tried to delete a web page entry in the bib, but still it only gets loaded without URL

minihessel commented Mar 11, 2015

@csch0 I even tried to delete a web page entry in the bib, but still it only gets loaded without URL

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minihessel Mar 11, 2015

Now it's working, don't know why. NP then, thanks!

minihessel commented Mar 11, 2015

Now it's working, don't know why. NP then, thanks!

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@rudvfaden So since you gave me no other feedback I suppose its working now, will push a new minor release later then.

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csch0 commented Mar 13, 2015

@rudvfaden So since you gave me no other feedback I suppose its working now, will push a new minor release later then.

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rudvfaden Mar 13, 2015

Sorry. I forgot. It now shows the right journal. But the wird abbriviation with three dots is back. I.e.

journal = {Chemistry \& …}

rudvfaden commented Mar 13, 2015

Sorry. I forgot. It now shows the right journal. But the wird abbriviation with three dots is back. I.e.

journal = {Chemistry \& …}
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ntezak Mar 18, 2015

The problem persists for me, I usually don't have a journal entry and if I do, it contains the wrong information

ntezak commented Mar 18, 2015

The problem persists for me, I usually don't have a journal entry and if I do, it contains the wrong information

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ntezak Mar 18, 2015

Here is an example:

@article{Gardiner1992WaveFunction,
author = {Gardiner, CW and Parkins, AS and Zoller, P.},
booktitle = {APS},
journal = {APS},
number = 7,
pages = 4363,
publisher = {APS},
title = {Wave-function quantum stochastic differential equations and quantum-jump simulation methods},
url = {http://pra.aps.org/abstract/PRA/v46/i7/p4363\_1},
volume = 46,
year = 1992
}

(I rebuilt the cache, too)

ntezak commented Mar 18, 2015

Here is an example:

@article{Gardiner1992WaveFunction,
author = {Gardiner, CW and Parkins, AS and Zoller, P.},
booktitle = {APS},
journal = {APS},
number = 7,
pages = 4363,
publisher = {APS},
title = {Wave-function quantum stochastic differential equations and quantum-jump simulation methods},
url = {http://pra.aps.org/abstract/PRA/v46/i7/p4363\_1},
volume = 46,
year = 1992
}

(I rebuilt the cache, too)

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csch0 Mar 19, 2015

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@ntezak With the latest testing version of LaTeXing?

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csch0 commented Mar 19, 2015

@ntezak With the latest testing version of LaTeXing?

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ntezak Mar 23, 2015

It appears to be working in the testing version. Thanks!

ntezak commented Mar 23, 2015

It appears to be working in the testing version. Thanks!

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aeonstone Mar 26, 2015

I'm not sure if this issue is related, but since the changes in the Mendeley API I can no longer sync by folder name. I have many items in my mendeley library. Some are articles and books etc. that I would use as references, but some are just pdfs of lecture notes that would never be cited. I keep my articles in an "Article" folder and I keep the notes in a "Notes" folder. I used to be able to just sync the Article folder with the Remote.bib file but now I cannot. I can sync by Tags but cannot sync by folder.

aeonstone commented Mar 26, 2015

I'm not sure if this issue is related, but since the changes in the Mendeley API I can no longer sync by folder name. I have many items in my mendeley library. Some are articles and books etc. that I would use as references, but some are just pdfs of lecture notes that would never be cited. I keep my articles in an "Article" folder and I keep the notes in a "Notes" folder. I used to be able to just sync the Article folder with the Remote.bib file but now I cannot. I can sync by Tags but cannot sync by folder.

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csch0 Mar 29, 2015

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Thanks @aeonstone, realised this too just recently. It is a change in the current API

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csch0 commented Mar 29, 2015

Thanks @aeonstone, realised this too just recently. It is a change in the current API

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Ok thanks! Again is this with the latest testing version of LaTeXing??

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csch0 commented Mar 29, 2015

Ok thanks! Again is this with the latest testing version of LaTeXing??

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idelft Apr 1, 2015

For me, also Journal field missing from Mendeley remote bib.!!! even I do rebuild cache!!

idelft commented Apr 1, 2015

For me, also Journal field missing from Mendeley remote bib.!!! even I do rebuild cache!!

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@idelft What LaTeXing version? Latest Testing (Then there is a real problem)?

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csch0 commented Apr 1, 2015

@idelft What LaTeXing version? Latest Testing (Then there is a real problem)?

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idelft Apr 1, 2015

my latexing version is 1.2.9

idelft commented Apr 1, 2015

my latexing version is 1.2.9

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Yes if you read this history you can see there are problem with the API, could you please give the latest testing version (http://docs.latexing.com/stable/introduction.html#testing-version) a go and report back if its working.

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csch0 commented Apr 1, 2015

Yes if you read this history you can see there are problem with the API, could you please give the latest testing version (http://docs.latexing.com/stable/introduction.html#testing-version) a go and report back if its working.

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idelft Apr 1, 2015

Do you have any guess when the new stable version will be available for updating? becasue I am on a productive system and it is not allowed to use test versions.

idelft commented Apr 1, 2015

Do you have any guess when the new stable version will be available for updating? becasue I am on a productive system and it is not allowed to use test versions.

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Once the testers coming back with positive results... but for this feature it will be most likely in the next couple of days..

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csch0 commented Apr 1, 2015

Once the testers coming back with positive results... but for this feature it will be most likely in the next couple of days..

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aeonstone Apr 1, 2015

Sorry for delayed reply. No I am not using the testing version. I'm finishing my dissertation so the work is mission critical. The only reason I posted was that my issue didn't start with the last update (at least I don't think so). I printed a copy of my dissertation 3/20 and the citations were fine, but last week I started having the issues. I'm just exporting the .bib manually for now. Thanks for the great work.

aeonstone commented Apr 1, 2015

Sorry for delayed reply. No I am not using the testing version. I'm finishing my dissertation so the work is mission critical. The only reason I posted was that my issue didn't start with the last update (at least I don't think so). I printed a copy of my dissertation 3/20 and the citations were fine, but last week I started having the issues. I'm just exporting the .bib manually for now. Thanks for the great work.

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minihessel Apr 20, 2015

When using the mendely api with web pages, Latexing does not include date accessed.

Here's an example of a citation which has date accessed in mendely, but doesn't in the .bib file:

@misc{Viger2015Performance,
author = {Fournier-Viger, Philippe},
title = {Performance},
url = {http://www.philippe-fournier-viger.com/spmf/index.php?link=performance.php},
year = 2015
}

Also, some web addresses get messed up, for example the address http://www.cs.uic.edu/~kzhao/Papers/00_course_Data_visualization.pdf turns into http://www.cs.uic.edu/ {extasciitilde}kzhao/Papers/00 course Data visualization.pdf.

@csch0 any idea when a new version will be released? I'm going to deliver my thesis in 1-2 weeks :)

minihessel commented Apr 20, 2015

When using the mendely api with web pages, Latexing does not include date accessed.

Here's an example of a citation which has date accessed in mendely, but doesn't in the .bib file:

@misc{Viger2015Performance,
author = {Fournier-Viger, Philippe},
title = {Performance},
url = {http://www.philippe-fournier-viger.com/spmf/index.php?link=performance.php},
year = 2015
}

Also, some web addresses get messed up, for example the address http://www.cs.uic.edu/~kzhao/Papers/00_course_Data_visualization.pdf turns into http://www.cs.uic.edu/ {extasciitilde}kzhao/Papers/00 course Data visualization.pdf.

@csch0 any idea when a new version will be released? I'm going to deliver my thesis in 1-2 weeks :)

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minihessel Apr 20, 2015

When using in collection, the Latexing plugin uses "Publisher" for "Book Title". See the example below:

Book title here is "Advances in Knowledge Discovery and Data Mining SE - 13" in mendely.

@incollection{Koh2005Finding,
author = {Koh, YunSing and Rountree, Nathan},
booktitle = {Springer Berlin Heidelberg},
isbn = {978-3-540-26076-9},
journal = {Springer Berlin Heidelberg},
pages = {97-106},
publisher = {Springer Berlin Heidelberg},
series = {Lecture Notes in Computer Science},
title = {Finding Sporadic Rules Using Apriori-Inverse},
url = {http://dx.doi.org/10.1007/11430919\_13},
volume = 3518,
year = 2005
}

minihessel commented Apr 20, 2015

When using in collection, the Latexing plugin uses "Publisher" for "Book Title". See the example below:

Book title here is "Advances in Knowledge Discovery and Data Mining SE - 13" in mendely.

@incollection{Koh2005Finding,
author = {Koh, YunSing and Rountree, Nathan},
booktitle = {Springer Berlin Heidelberg},
isbn = {978-3-540-26076-9},
journal = {Springer Berlin Heidelberg},
pages = {97-106},
publisher = {Springer Berlin Heidelberg},
series = {Lecture Notes in Computer Science},
title = {Finding Sporadic Rules Using Apriori-Inverse},
url = {http://dx.doi.org/10.1007/11430919\_13},
volume = 3518,
year = 2005
}

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@minihessel I will have a look into this tonight, and contact you by email so we can solve this problems for good. Could you drop am email at info@latexing.com so I can come back to you directly

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csch0 commented Apr 20, 2015

@minihessel I will have a look into this tonight, and contact you by email so we can solve this problems for good. Could you drop am email at info@latexing.com so I can come back to you directly

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minihessel commented Apr 20, 2015

@csch0 done

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You send problem (#105 (comment)) should be fixed in the latest testing version already.

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csch0 commented Apr 20, 2015

You send problem (#105 (comment)) should be fixed in the latest testing version already.

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minihessel Apr 20, 2015

@csch0 great, guess we can publish a final version tonight / tomorrow then?

minihessel commented Apr 20, 2015

@csch0 great, guess we can publish a final version tonight / tomorrow then?

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Could you check the latest testing version if it solved this problem #105 (comment)

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csch0 commented Apr 20, 2015

Could you check the latest testing version if it solved this problem #105 (comment)

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minihessel Apr 20, 2015

@csch0 it works great. Now we just need to fix the date accessed.

minihessel commented Apr 20, 2015

@csch0 it works great. Now we just need to fix the date accessed.

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minihessel Apr 21, 2015

@csch0 I see you pushed a new version yesterday. Unfortunately web page still doesn't have date retrieved.

minihessel commented Apr 21, 2015

@csch0 I see you pushed a new version yesterday. Unfortunately web page still doesn't have date retrieved.

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@minihessel I did? Sorry had some personal issues came in the way, will do it tonight for sure

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csch0 commented Apr 21, 2015

@minihessel I did? Sorry had some personal issues came in the way, will do it tonight for sure

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minihessel Apr 21, 2015

Sublime said so. At least there was a new version. Okay, great :) @csch0

minihessel commented Apr 21, 2015

Sublime said so. At least there was a new version. Okay, great :) @csch0

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minihessel Apr 21, 2015

@csch0 another bug. References with ~ in the url get bugged. Take for example this URL: http://www.cs.uic.edu/~kzhao/Papers/00_course_Data_visualization.pdf

Which ends up being url = {http://www.cs.uic.edu/{ extasciitilde}kzhao/Papers/00_course_Data_visualization.pdf} in the bibliography file.

minihessel commented Apr 21, 2015

@csch0 another bug. References with ~ in the url get bugged. Take for example this URL: http://www.cs.uic.edu/~kzhao/Papers/00_course_Data_visualization.pdf

Which ends up being url = {http://www.cs.uic.edu/{ extasciitilde}kzhao/Papers/00_course_Data_visualization.pdf} in the bibliography file.

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Yes same like here or? #105 (comment)

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csch0 commented Apr 21, 2015

Yes same like here or? #105 (comment)

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minihessel Apr 21, 2015

@csch0 ye sorry, I forgot that I already wrote it. I have the flu 👎

minihessel commented Apr 21, 2015

@csch0 ye sorry, I forgot that I already wrote it. I have the flu 👎

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@minihessel no problem at all.

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csch0 commented Apr 21, 2015

@minihessel no problem at all.

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ok @minihessel just submitted 1.2.10-rc.4 to the testing repository which should fix the missing url date as well as the problem with the ~ in the url.

Could you please check that

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csch0 commented Apr 21, 2015

ok @minihessel just submitted 1.2.10-rc.4 to the testing repository which should fix the missing url date as well as the problem with the ~ in the url.

Could you please check that

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minihessel Apr 21, 2015

Will do first thing in the office tomorrow !

2015-04-21 20:38 GMT+02:00 csch0 notifications@github.com:

ok @minihessel https://github.com/minihessel just submitted 1.2.10-rc.4
to the testing repository which should fix the missing url date as well as
the problem with the ~ in the url.

Could you please check that


Reply to this email directly or view it on GitHub
#105 (comment).


Med vennlig hilsen Eskil
www.eskil-hesselroth.com

minihessel commented Apr 21, 2015

Will do first thing in the office tomorrow !

2015-04-21 20:38 GMT+02:00 csch0 notifications@github.com:

ok @minihessel https://github.com/minihessel just submitted 1.2.10-rc.4
to the testing repository which should fix the missing url date as well as
the problem with the ~ in the url.

Could you please check that


Reply to this email directly or view it on GitHub
#105 (comment).


Med vennlig hilsen Eskil
www.eskil-hesselroth.com

@csch0 csch0 referenced this issue May 3, 2015

Closed

Mendeley import #66

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adamaltmejd May 4, 2015

I'm still having issues with journal titles not being included in @Article entries. Also trying to cite a working paper that Mendeley sorts as @Unpublished, with a series title under "booktitle" that is not included. Using 1.2.9 and cleared cache.

Copying the BibTex from Mendeley I have:

@unpublished{Bigoni2014,
author = {Bigoni, Maria and Camera, Gabriele and Casari, Marco},
booktitle = {CFS Working Paper No. 496},
file = {:Users/ad.3103/Dropbox/Reading/Library/Bigoni, Camera, Casari/2014 - Money is More than Memory - Bigoni, Camera, Casari - CFS Working Paper No. 496.pdf:pdf},
mendeley-groups = {Choosing-Money},
title = {{Money is More than Memory}},
year = {2014}
}

@article{Kocherlakota1998,
abstract = {This paper examines the sets of feasible allocations in a large class of economic environments in which commitment is impossible (following Myerson [8], the standard definition of feasibility is adapted to take account of the lack of commitment). The environments feature eithermemoryormoney. Memory is defined as knowledge on the part of an agent of the full histories of all agents with whom he has had direct or indirect contact in the past. Money is defined as an object that does not enter utility or production functions, and is available in fixed supply. The main proposition is that any allocation that is feasible in an environment with money is also feasible in the same environment with memory. Depending on the environment, the converse may or may not be true. Hence, from a technological point of view, money is equivalent to a primitive form of memory.Journal of Economic LiteratureClassification Numbers: E40, C73, D82.},
author = {Kocherlakota, Narayana R.},
doi = {10.1006/jeth.1997.2357},
file = {:Users/ad.3103/Dropbox/Reading/Library/Kocherlakota/1998 - Money Is Memory - Kocherlakota - Journal of Economic Theory.pdf:pdf},
issn = {00220531},
journal = {Journal of Economic Theory},
mendeley-groups = {Choosing-Money},
month = aug,
number = {2},
pages = {232--251},
title = {{Money Is Memory}},
url = {http://www.sciencedirect.com/science/article/pii/S0022053197923577},
volume = {81},
year = {1998}
}

Using LaTeXing the bibtex file becomes:

@unpublished{Bigoni2014,
    author = {Bigoni, Maria and Camera, Gabriele and Casari, Marco},
    title = {Money is More than Memory},
    year = 2014
}
@article{Kocherlakota1998,
    author = {Kocherlakota, Narayana R.},
    issn = 00220531,
    month = 8,
    number = 2,
    pages = {232-251},
    title = {Money Is Memory},
    url = {http://www.sciencedirect.com/science/article/pii/S0022053197923577},
    volume = 81,
    year = 1998
}

adamaltmejd commented May 4, 2015

I'm still having issues with journal titles not being included in @Article entries. Also trying to cite a working paper that Mendeley sorts as @Unpublished, with a series title under "booktitle" that is not included. Using 1.2.9 and cleared cache.

Copying the BibTex from Mendeley I have:

@unpublished{Bigoni2014,
author = {Bigoni, Maria and Camera, Gabriele and Casari, Marco},
booktitle = {CFS Working Paper No. 496},
file = {:Users/ad.3103/Dropbox/Reading/Library/Bigoni, Camera, Casari/2014 - Money is More than Memory - Bigoni, Camera, Casari - CFS Working Paper No. 496.pdf:pdf},
mendeley-groups = {Choosing-Money},
title = {{Money is More than Memory}},
year = {2014}
}

@article{Kocherlakota1998,
abstract = {This paper examines the sets of feasible allocations in a large class of economic environments in which commitment is impossible (following Myerson [8], the standard definition of feasibility is adapted to take account of the lack of commitment). The environments feature eithermemoryormoney. Memory is defined as knowledge on the part of an agent of the full histories of all agents with whom he has had direct or indirect contact in the past. Money is defined as an object that does not enter utility or production functions, and is available in fixed supply. The main proposition is that any allocation that is feasible in an environment with money is also feasible in the same environment with memory. Depending on the environment, the converse may or may not be true. Hence, from a technological point of view, money is equivalent to a primitive form of memory.Journal of Economic LiteratureClassification Numbers: E40, C73, D82.},
author = {Kocherlakota, Narayana R.},
doi = {10.1006/jeth.1997.2357},
file = {:Users/ad.3103/Dropbox/Reading/Library/Kocherlakota/1998 - Money Is Memory - Kocherlakota - Journal of Economic Theory.pdf:pdf},
issn = {00220531},
journal = {Journal of Economic Theory},
mendeley-groups = {Choosing-Money},
month = aug,
number = {2},
pages = {232--251},
title = {{Money Is Memory}},
url = {http://www.sciencedirect.com/science/article/pii/S0022053197923577},
volume = {81},
year = {1998}
}

Using LaTeXing the bibtex file becomes:

@unpublished{Bigoni2014,
    author = {Bigoni, Maria and Camera, Gabriele and Casari, Marco},
    title = {Money is More than Memory},
    year = 2014
}
@article{Kocherlakota1998,
    author = {Kocherlakota, Narayana R.},
    issn = 00220531,
    month = 8,
    number = 2,
    pages = {232-251},
    title = {Money Is Memory},
    url = {http://www.sciencedirect.com/science/article/pii/S0022053197923577},
    volume = 81,
    year = 1998
}
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adamaltmejd May 14, 2015

Any news on this?

adamaltmejd commented May 14, 2015

Any news on this?

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adamaltmejd Jun 4, 2015

This still doesn't work for me. Ping @csch0

adamaltmejd commented Jun 4, 2015

This still doesn't work for me. Ping @csch0

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