BIOM fix and addition of script to get num reads in QIIME2 FASTQ files #31
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Addressed deprecated issue Biom error for convert_dada2_out.R #30 in
convert_dada2_out.R
: now outputs BIOM file in legacy TSV format to get around issues with biom and biomformat R packages.Added script
qiime2_fastq_lengths.py
, which can be used with QIIME2 artifact files to keep track of how many reads were filtered out at various pre-processing steps.