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BIOM fix and addition of script to get num reads in QIIME2 FASTQ files #31

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merged 2 commits into from Jul 10, 2018
Merged

BIOM fix and addition of script to get num reads in QIIME2 FASTQ files #31

merged 2 commits into from Jul 10, 2018

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gavinmdouglas
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  • Addressed deprecated issue Biom error for convert_dada2_out.R #30 in convert_dada2_out.R: now outputs BIOM file in legacy TSV format to get around issues with biom and biomformat R packages.

  • Added script qiime2_fastq_lengths.py, which can be used with QIIME2 artifact files to keep track of how many reads were filtered out at various pre-processing steps.

@gavinmdouglas gavinmdouglas merged commit 4330e63 into LangilleLab:master Jul 10, 2018
@gavinmdouglas gavinmdouglas deleted the qiime2_fastq_sizes branch July 10, 2018 19:12
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