remove metrics stores and references to this. is of local flavour and…

… should be in layer

config/store.yml

@@ -41,13 +41,6 @@ main:
       reqcopy:
         plugins: []
 
-metrics:
-  package: DBI
-  options:
-    data_source: "DBI:mysql:database=librecat_metrics"
-    username: librecat
-    password: librecat
-
 search:
   package: ElasticSearch
   options:

devel/mysql.sql

@@ -1,5 +1,3 @@
 CREATE DATABASE librecat_main;
-CREATE DATABASE librecat_metrics;
 GRANT ALL ON librecat_main.*    TO 'librecat'@'localhost' IDENTIFIED BY 'librecat';
-GRANT ALL ON librecat_metrics.* TO 'librecat'@'localhost' IDENTIFIED BY 'librecat';
 FLUSH PRIVILEGES;

lib/LibreCat/App/Helper.pm

@@ -273,13 +273,6 @@ sub get_statistics {
 
 }
 
-sub get_metrics {
-    my ($self, $bag, $id) = @_;
-    return {} unless $bag and $id;
-
-    return Catmandu->store('metrics')->bag($bag)->get($id);
-}
-
 sub new_record {
     my ($self, $bag) = @_;
     Catmandu->store('main')->bag($bag)->generate_id;

lib/LibreCat/App/Search/Route/ajax.pm

@@ -13,20 +13,6 @@ use Dancer::Plugin::Ajax;
 use HTML::Entities;
 use LibreCat::App::Helper;
 
-=head2 AJAX /metrics/:id
-
-Web of Science 'Times Cited' information
-
-=cut
-
-ajax '/metrics/:id' => sub {
-    my $metrics = h->get_metrics('wos', params->{id});
-    return to_json {
-        times_cited => $metrics->{times_cited},
-        citing_url  => $metrics->{citing_url},
-    };
-};
-
 =head2 AJAX /search_researcher
 
 =cut

views/embed/links_js.tt

@@ -1 +1 @@
-[% bag = entry.type == "research_data" ? "data" : "publication" %]<a href="[% uri_base %]/[% bag %]/[% entry._id %]" target="_top">PUB</a>[% IF entry.type == "research_data" AND (entry.file || entry.related_material || entry.externalFiles == "1") %] | <a href="[% uri_base %]/[% bag %]/[% entry._id %]" class="label label-primary">Files available</a>[% ELSIF entry.type != "research_data" AND entry.file AND entry.file.size > 1 %][% display_file = [] %][% counter = 0 %][% FOREACH fi IN entry.file %][% IF fi.open_access %][% counter = counter + 1 %][% display_file.push(fi) %][% END %][% END %][% IF counter > 1 %] | <a href="[% uri_base %]/[% bag %]/[% entry._id %]" class="label label-primary">Files available</a>[% ELSIF counter == 1 %] | <a href="[% uri_base %]/download/[% entry._id %]/[% display_file.0.file_id %]/[% display_file.0.file_name | uri %]">[% display_file.0.content_type == "application/pdf" ? "PDF" : "File" %]</a>[% END %][% ELSIF entry.type != "research_data" AND entry.file AND entry.file.size == 1 %][% IF entry.file.0.open_access %] | <a href="[% uri_base %]/download/[% entry._id %]/[% entry.file.0.file_id %]/[% entry.file.0.file_name | uri %]">[% entry.file.0.content_type == "application/pdf" ? "PDF" : "File" %]</a>[% END %][% END %][% FOREACH supp IN entry.related_material %][% IF supp.link  %] | <a href="[% supp.link.url %]" title="[% supp.link.title %]">Suppl. Material</a>[% ELSIF supp.file %] | <a href="[% uri_base %]/download/[% entry._id  %]/[% supp.file.file_id %]/[% supp.file.file_name | uri %]" title="[% supp.file.file_name %]">Suppl. Material</a> [% END %][% END %][% IF entry.doi %]| <a href="http://doi.org/[% entry.doi %]" target="_top">DOI</a>[% END %][% IF entry.external_id.isi %] | <a href="http://ws.isiknowledge.com/cps/openurl/service?url_ver=Z39.88-2004&amp;rft_id=info:ut/[% entry.external_id.isi %]" target="_top">WoS</a>[% END %][% IF entry.external_id.pmid %] | <a href="http://www.ncbi.nlm.nih.gov/pubmed/[% entry.external_id.pmid %]" target="_top">PubMed</a> | <a href="http://europepmc.org/abstract/MED/[% entry.external_id.pmid %]">Europe PMC</a>[% END %][% IF entry.external_id.arxiv %] | <a href="http://arxiv.org/abs/[% entry.external_id.arxiv %]" target="_top">arXiv</a>[% END %][% IF entry.external_id.inspire %] | <a href="http://inspirebeta.net/record/[% entry.external_id.inspire %]" target="_top">Inspire</a>[% END %][% IF entry.external_id.ahf %] | <a href="http://www.oldenbourg.de/verlag/ahf/hbo.php?F=titel&amp;T=HB&amp;ID=[% entry.external_id.ahf %]" target="_top">AHF</a>[% END %][% IF qp.timescited && entry.metrics.timesCited %] | <a href="[% entry.metrics.citingURL %]" target="_parent">WOS&reg; Times Cited: [% entry.metrics.timesCited %]</a>[% END %]
+[% bag = entry.type == "research_data" ? "data" : "publication" %]<a href="[% uri_base %]/[% bag %]/[% entry._id %]" target="_top">PUB</a>[% IF entry.type == "research_data" AND (entry.file || entry.related_material || entry.externalFiles == "1") %] | <a href="[% uri_base %]/[% bag %]/[% entry._id %]" class="label label-primary">Files available</a>[% ELSIF entry.type != "research_data" AND entry.file AND entry.file.size > 1 %][% display_file = [] %][% counter = 0 %][% FOREACH fi IN entry.file %][% IF fi.open_access %][% counter = counter + 1 %][% display_file.push(fi) %][% END %][% END %][% IF counter > 1 %] | <a href="[% uri_base %]/[% bag %]/[% entry._id %]" class="label label-primary">Files available</a>[% ELSIF counter == 1 %] | <a href="[% uri_base %]/download/[% entry._id %]/[% display_file.0.file_id %]/[% display_file.0.file_name | uri %]">[% display_file.0.content_type == "application/pdf" ? "PDF" : "File" %]</a>[% END %][% ELSIF entry.type != "research_data" AND entry.file AND entry.file.size == 1 %][% IF entry.file.0.open_access %] | <a href="[% uri_base %]/download/[% entry._id %]/[% entry.file.0.file_id %]/[% entry.file.0.file_name | uri %]">[% entry.file.0.content_type == "application/pdf" ? "PDF" : "File" %]</a>[% END %][% END %][% FOREACH supp IN entry.related_material %][% IF supp.link  %] | <a href="[% supp.link.url %]" title="[% supp.link.title %]">Suppl. Material</a>[% ELSIF supp.file %] | <a href="[% uri_base %]/download/[% entry._id  %]/[% supp.file.file_id %]/[% supp.file.file_name | uri %]" title="[% supp.file.file_name %]">Suppl. Material</a> [% END %][% END %][% IF entry.doi %]| <a href="http://doi.org/[% entry.doi %]" target="_top">DOI</a>[% END %][% IF entry.external_id.isi %] | <a href="http://ws.isiknowledge.com/cps/openurl/service?url_ver=Z39.88-2004&amp;rft_id=info:ut/[% entry.external_id.isi %]" target="_top">WoS</a>[% END %][% IF entry.external_id.pmid %] | <a href="http://www.ncbi.nlm.nih.gov/pubmed/[% entry.external_id.pmid %]" target="_top">PubMed</a> | <a href="http://europepmc.org/abstract/MED/[% entry.external_id.pmid %]">Europe PMC</a>[% END %][% IF entry.external_id.arxiv %] | <a href="http://arxiv.org/abs/[% entry.external_id.arxiv %]" target="_top">arXiv</a>[% END %][% IF entry.external_id.inspire %] | <a href="http://inspirebeta.net/record/[% entry.external_id.inspire %]" target="_top">Inspire</a>[% END %][% IF entry.external_id.ahf %] | <a href="http://www.oldenbourg.de/verlag/ahf/hbo.php?F=titel&amp;T=HB&amp;ID=[% entry.external_id.ahf %]" target="_top">AHF</a>[% END %]

views/publication/record.tt

@@ -21,11 +21,6 @@
 [%- relLinkRd = [] %]
 [%- relLinkSw = [] %]
 [%- relFile = [] %]
-[%- IF external_id.pmid.0 %]
-  [%- epmc_cit = h.get_metrics('epmc_citations',external_id.pmid.0) %]
-  [%- epmc_ref = h.get_metrics('epmc_references',external_id.pmid.0) %]
-  [%- ebi_data = h.get_metrics('epmc_dblinks',external_id.pmid.0) %]
-[%- END -%]
 
 [%- FOREACH key IN related_material.keys %]
   [%- IF key == "record" %]
@@ -208,22 +203,6 @@
           <li><a href="#relResData" data-toggle="tab">[% h.loc("frontdoor.tabs.data_publication.label") %]</a></li>
           [% END %]
 
-          [% IF toolkit %]
-          <li><a href="#toolkit" data-toggle="tab">[% h.loc("frontdoor.tabs.toolkit.label") %]</a></li>
-          [% END %]
-
-          [% IF ebi_data %]
-          <li><a href="#ebi_dblinks" data-toggle="tab">[% h.loc("frontdoor.tabs.ebi_links.label") %]</a></li>
-          [% END %]
-
-          [% IF epmc_cit %]
-          <li><a href="#ebi_citations" data-toggle="tab">[% h.loc("frontdoor.tabs.epmc_citation.label") %]</a></li>
-          [% END %]
-
-          [% IF epmc_ref %]
-          <li><a href="#ebi_references" data-toggle="tab">[% h.loc("frontdoor.tabs.epmc_references.label") %]</a></li>
-          [% END %]
-
           [% IF confLetter.size %]
           <li><a href="#confletter" data-toggle="tab">[% h.loc("frontdoor.tabs.confirmation_letter.label") %]</a>
           [% END %]
@@ -260,14 +239,6 @@
 
           [% IF relResData %] [% PROCESS publication/tab_relresdata.tt %] [% END %]
 
-          [% IF toolkit %] [% PROCESS publication/tab_toolkit.tt %] [% END %]
-
-          [% IF ebi_data %] [% PROCESS publication/tab_ebi_links.tt %] [% END %]
-
-          [% IF epmc_cit %] [% PROCESS publication/tab_ebi_cit.tt %] [% END %]
-
-          [% IF epmc_ref %] [% PROCESS publication/tab_ebi_ref.tt %] [% END %]
-
           [% IF relMat.size OR relLink.size %]
             [% PROCESS publication/tab_relmat.tt %]
           [% END %]