GitHub - LiorFaigon/CO_01: Champions Oncology - Exercise for bioinformatics candidates

LiorFaigon / CO_01 Public

Champions Oncology - Exercise for bioinformatics candidates - Lior Faigon

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
.gitignore		.gitignore
CO_01.Rproj		CO_01.Rproj
DAVID functional annotation chart for upregulated genes.txt		DAVID functional annotation chart for upregulated genes.txt
Dispersion plot.png		Dispersion plot.png
Exercise for bioinformatics candidates.pdf		Exercise for bioinformatics candidates.pdf
Expression Distribution (Density).png		Expression Distribution (Density).png
Heatmap (100 most significant annotated genes).png		Heatmap (100 most significant annotated genes).png
LF_01.R		LF_01.R
Library Sizes for Filtered Data with T.Test.png		Library Sizes for Filtered Data with T.Test.png
MA plot.png		MA plot.png
PCA_12.png		PCA_12.png
Volcano plot.png		Volcano plot.png
background_genes.csv		background_genes.csv
counts.txt		counts.txt
differential_expression_res.csv		differential_expression_res.csv
gene-annotation.txt		gene-annotation.txt
sample-annotation.txt		sample-annotation.txt
significantly_upregulated_genes.csv		significantly_upregulated_genes.csv
vst_normalized_counts_filtered.rda		vst_normalized_counts_filtered.rda
vst_normalized_counts_unfiltered.rda		vst_normalized_counts_unfiltered.rda