chg: Install ete4 for testing #238

	name: Python application

	on:
	push:
	branches: [ main, ete4 ]
	pull_request:
	branches: [ main ]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.8", "3.9", "3.10", "3.11"]

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{matrix.python-version}}
	uses: actions/setup-python@v4
	with:
	python-version: ${{matrix.python-version}}

	- name: Install dependencies
	run: \|
	git submodule update --init --recursive
	python -m pip install --upgrade pip poetry

	- run: echo "POETRY_VERSION=$(poetry --version)" >> $GITHUB_ENV
	shell: bash

	- run: poetry config installer.modern-installation false
	# workaround for bug: https://github.com/microsoft/debugpy/issues/1246
	if: ${{ contains(env.POETRY_VERSION, '1.4.1') }}
	shell: bash

	- name: Install ETE4
	run: \|
	git clone https://github.com/etetoolkit/ete.git
	pip install -e ete/

	- name: Run MyPy
	run: \|
	poetry install -vvv --no-cache
	poetry run mypy .

	- name: Test with pytest
	run: \|
	poetry run pytest --cov=har2tree tests/test.py
	poetry run pytest --cov=har2tree tests/simple_test.py

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3

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