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  • AD lab
  • Quebec

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Louis-MG/README.md

Hello there !

I am a bioinformatician at the CHUL in Quebec, Canada. I got a Bachelor in Biology at the University of Lausanne (UNIL) in 2020 and a Msc in Bioinformatics from the Université Claude-Bernard Lyon 1 (France).

Interests:

My main interests in bioinformatics is the development of tools. I work on metagenomics.

Languages:

Python

bash

R

Willing to learn C++

Repo:

You will find :

  • META-DIFF, a pipeline for metagenomics
  • rKmerBroom, a modified version of aKmerBroom for a currently ongoing project (ancient DNA samples decontamination)
  • RBD, a work based on MNHN-Tree-Tools for recursive binary clustering of DNA sequences
  • k-TSP-classifier, a machine-learning script in R to classify exczema types based on gene expression
  • various forks of tools

Pinned Loading

  1. AugmentedReallityProject AugmentedReallityProject Public

    JavaScript

  2. k-TSP-Classifier k-TSP-Classifier Public

    Script that splits the dataset into k stratified sub-datasets for k-TSP cross-validation.

    R

  3. RecursiveBinaryDivisor RecursiveBinaryDivisor Public

    Script to use the mnhn-tree-tools in a specific way. Uses cluster_dbscan_pca to divide each cluster in two clusters, until further division cannot be done.

    F*

  4. META-DIFF META-DIFF Public

    This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.

    Python