Skip to content
@MD-Anderson-Bioinformatics

MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology

Tools and projects of BCB at MD Anderson Cancer Center

Popular repositories

  1. A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.

    9

  2. MBatch Public archive

    Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage

    R 9

  3. NG-CHM Public

    A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

    JavaScript 6 7

  4. NGCHM-R Public

    An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

    R 6 3

  5. R package wrapped around C++ used to quickly read very large "platform" level matrices from within a ZIP archive

    C 4 1

  6. The MBatch R package and Docker image are designed to help assess and correct for batch effects.

    R 3 3

Repositories

  • NGCHMSupportFiles

    Support files for NGCHM-R package

    R 0 2 0 0 Updated Sep 15, 2021
  • NG-CHM

    A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

    JavaScript 6 GPL-2.0 7 7 4 Updated Sep 15, 2021
  • NGCHM-R

    An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

    R 6 3 14 3 Updated Sep 15, 2021
  • ScatterPlotPlugin3D

    An NG-CHM panel plugin for three-dimensional scatter plots.

    JavaScript 0 GPL-3.0 0 10 0 Updated Sep 13, 2021
  • NGCHMDemoData

    Demo Data for NGCHM R package.

    R 0 0 0 0 Updated Sep 8, 2021
  • rppaspace

    Reverse-Phase Protein Array Super Position and Concentration EvaluationThe RPPASPACE R package provides tools for the analysis of reverse-phase protein arrays (RPPAs), which are also known as "tissue lysate arrays" or simply "lysate arrays". The package's primary purpose is to input a set of quantification files representing dilution series of s…

    R 1 0 0 0 Updated Aug 26, 2021
  • BatchEffectsInterfaceStack

    Docker Compose Stack for running Batch Effects Interface

    HTML 1 0 0 1 Updated Aug 20, 2021
  • StandardizedData

    Code and packages for Standardized Data format for large scale studies.

    Java 1 0 0 0 Updated Aug 20, 2021
  • BatchEffectsPackage

    The MBatch R package and Docker image are designed to help assess and correct for batch effects.

    R 3 3 0 0 Updated Aug 20, 2021
  • DataAPI

    DataAPI is a project for accesing and viewing the data and analysis (particulary of Batch Effects) of large datasets in Standardized Data format.

    JavaScript 1 0 0 0 Updated Aug 20, 2021

Most used topics

Loading…