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@MD-Anderson-Bioinformatics

MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology

Tools and projects of BCB at MD Anderson Cancer Center

Popular repositories

  1. BatchEffectsPackage BatchEffectsPackage Public

    The MBatch R package and Docker image are designed to help assess and correct for batch effects.

    R 16 5

  2. MBatch MBatch Public archive

    Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage

    R 12 1

  3. SpliceSeq SpliceSeq Public

    A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.

    11

  4. NG-CHM NG-CHM Public

    A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

    JavaScript 10 10

  5. NGCHM-R NGCHM-R Public

    An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

    R 7 3

  6. GeneSurvey GeneSurvey Public

    Gene Survey R package - take TCGA Standardized Data and make gene level cross-disease and sometimes cross platform comparisons and evaluations simpler to perform

    R 3 1

Repositories

Showing 10 of 39 repositories
  • MD-Anderson-Bioinformatics/NG-CHM-Artifacts’s past year of commit activity
    HTML 0 GPL-2.0 1 0 0 Updated Jun 19, 2024
  • NG-CHM Public

    A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

    MD-Anderson-Bioinformatics/NG-CHM’s past year of commit activity
    JavaScript 10 GPL-2.0 10 126 0 Updated Jun 19, 2024
  • NGCHM-R Public

    An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)

    MD-Anderson-Bioinformatics/NGCHM-R’s past year of commit activity
    R 7 3 28 0 Updated Jun 17, 2024
  • NGCHMDemoData Public

    Demo Data for NGCHM R package.

    MD-Anderson-Bioinformatics/NGCHMDemoData’s past year of commit activity
    R 0 1 0 1 Updated Jun 13, 2024
  • BatchEffectsInterfaceStack Public

    Docker Compose Stack for running Batch Effects Interface

    MD-Anderson-Bioinformatics/BatchEffectsInterfaceStack’s past year of commit activity
    HTML 1 0 0 0 Updated May 31, 2024
  • StandardizedData Public

    Code and packages for Standardized Data format for large scale studies.

    MD-Anderson-Bioinformatics/StandardizedData’s past year of commit activity
    JavaScript 1 0 0 0 Updated May 31, 2024
  • BatchEffectsPackage Public

    The MBatch R package and Docker image are designed to help assess and correct for batch effects.

    MD-Anderson-Bioinformatics/BatchEffectsPackage’s past year of commit activity
    R 16 5 3 1 Updated May 31, 2024
  • DataAPI Public

    DataAPI is a project for accesing and viewing the data and analysis (particulary of Batch Effects) of large datasets in Standardized Data format.

    MD-Anderson-Bioinformatics/DataAPI’s past year of commit activity
    JavaScript 1 0 0 0 Updated May 31, 2024
  • BatchEffectsPackageData Public

    Data Repo for BatchEffectsPackage

    MD-Anderson-Bioinformatics/BatchEffectsPackageData’s past year of commit activity
    HTML 1 0 0 0 Updated May 31, 2024
  • MetaBatchOmicBrowser Public

    Web application for viewing metabolomics batch effects analyses, as seen at https://bioinformatics.mdanderson.org/MOB/

    MD-Anderson-Bioinformatics/MetaBatchOmicBrowser’s past year of commit activity
    JavaScript 3 0 0 0 Updated May 31, 2024

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