update with tables for elapsed time

MGEScan · Jul 6, 2015 · 223a7b4 · 223a7b4
1 parent f11f17b
commit 223a7b4
Showing 1 changed file with 52 additions and 2 deletions.
diff --git a/docs/source/results.rst b/docs/source/results.rst
@@ -3,15 +3,53 @@ Test Results
 
 Four sample genomes were tested with MGEScan-LTR and MGEScan-nonLTR programs.
 
+* Test Environment: India Cluster on Futuresystems Cloud
+* Hardware Spec: Intel Xeon X5550 2.66GHz, 8 vCPUs, 16 GB DDR3 1333 MHz,
+  160GB 7200RPM SATA
+
+.. sidebar:: Page Contents
+
+   .. contents::
+         :local:
+
 D. melanogaster
 -------------------------------------------------------------------------------
 
+.. list-table:: Elapsed time for MGEScan (dm3)
+   :header-rows: 1
+
+   * - Dataset
+     - Program
+     - Total
+     - nonLTR
+     - LTR
+     - Options
+   * - d. melanogaster
+     - MGEScan1.3.1
+     - 3 hrs 40 mins (13,220 secs)
+     - 55 mins (3,320 secs)
+     - 2 hrs 45 mins  (9,900 secs)
+     - HMMER2, no MPI
+   * - d. melanogaster
+     - MGEScan2
+     - 2 hrs 35 mins (9,304 secs)
+     - 19 mins (1,170 secs)
+     - 2 hrs 35 mins (9,304 secs)
+     - HMMER3.1b1, no MPI
+   * - d. melanogaster
+     - MGEScan2 with MPI
+     - 1 hr 48 mins (6,502 secs)
+     - 15 mins (929 secs)
+     - 1 hr 48 mins (6,502 secs)
+     - HMMER3.1b1, MPI with 4 processors
+
 * :download:`dm3.en <sample/dm3.en.txt>`
 * :download:`dm3.gff3 <sample/dm3.gff3.txt>`
 * :download:`dm3.rt <sample/dm3.rt.txt>`
 * :download:`dm3.ltr.out <sample/dm3.ltr.out.txt>`
 
-Extra: 
+Extra Files
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 * :download:`en <sample/dm3/data/info/validation/en.txt>`
 * :download:`rt <sample/dm3/data/info/validation/rt.txt>`
@@ -44,4 +82,16 @@ Extra:
 * :download:`CR1.rt.dna <sample/dm3/data/info/full/CR1/CR1.rt.dna.txt>`
 * :download:`CR1.en.pep <sample/dm3/data/info/full/CR1/CR1.en.pep.txt>`
 * :download:`nonltr.gff3 <sample/dm3/data/info/nonltr.gff3.txt>`
-* 
+
+d. pulex        MGEScan1.3.1    No MPI  4 hrs 5mins     14,697 secs     1hr 8mins       4,127 secs      2 hrs 57 mins   10,570 secs
+MGEScan2        No MPI  2 hrs 36 mins   9,414 secs      46 mins 2,780 secs      2 hrs 36 mins   9,414 secs
+MGEScan2        MPI (4 Proc)    1hr 3mins       3,823 secs      4 mins  222 secs        1 hr 3mins      3,823 secs
+c. intestinalis exp1    MGEScan1.3.1    No MPI  3 hrs 34 mins   12,837 secs     21 mins 1,256 secs      3hrs 13 mins    11,581 secs
+MGEScan2        No MPI  2 hrs 23 mins   8,604 secs      　      42 secs 2 hrs 23 mins   8,604 secs
+MGEScan2        MPI (4 Proc)    50 mins 2,949 secs      　      13 secs 50 mins 2,949 secs
+c. intestinalis exp2    MGEScan1.3.1    No MPI  3 hrs 34 mins   12,837 secs     21 mins 1,256 secs      3hrs 13 mins    11,581 secs
+MGEScan2        No MPI  4 hrs 5 mins    14,727 secs     9 mins  503 secs        4hrs 5 mins     14,727 secs
+MGEScan2        MPI (4 Proc)    1hr 22mins      4,897 secs      3 mins  182 secs        1 hr 22 mins    4,897 secs
+s. purpuratus   MGEScan1.3.1    No MPI  45 hrs 12 mins  162,723 secs    6 hrs 34 mins   23,644 secs     38 hrs 37 mins  139,079 secs
+MGEScan2        No MPI  67 hrs 13 mins  242,002 secs    7 hrs 53 mins   28,392 secs     67 hrs 13 mins  242,002 secs
+MGEScan2        MPI (4 Proc)    12 hrs 55 mins  46,550 secs     2 hrs 36 mins   9,411 secs      12 hrs 55 mins  46,550 secs