Remove uses of char* in app CLI #2099
Workflow file for this run
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name: Checks | |
on: | |
pull_request: | |
types: [opened, synchronize] | |
branches: [ master, dev] | |
merge_group: | |
types: [checks_requested] | |
branches: [master] | |
jobs: | |
linux-clang-build: | |
runs-on: ubuntu-latest | |
env: | |
QT_SELECT: qt6 | |
SCCACHE_GHA_ENABLED: "true" | |
SCCACHE_CACHE_SIZE: "2G" | |
steps: | |
- uses: actions/checkout@v1 | |
with: | |
submodules: true | |
- name: install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install clang qt6-base-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev ninja-build python3-distutils python3-numpy | |
- name: Run sccache-cache | |
uses: mozilla-actions/sccache-action@v0.0.4 | |
- name: Get CMake | |
uses: lukka/get-cmake@latest | |
with: | |
cmakeVersion: '3.16.3' | |
- name: Print CMake version | |
run: cmake --version | |
- name: configure | |
run: > | |
cmake | |
-B build | |
-G Ninja | |
-D CMAKE_BUILD_TYPE=Release | |
-D MRTRIX_BUILD_TESTS=ON | |
-D MRTRIX_STL_DEBUGGING=ON | |
-D MRTRIX_WARNINGS_AS_ERRORS=ON | |
-D CMAKE_C_COMPILER=clang | |
-D CMAKE_CXX_COMPILER=clang++ | |
- name: build | |
run: cmake --build build | |
- name: unit tests | |
run: cd build && ctest -L unittest --output-on-failure | |
- name: binary tests | |
run: cd build && ctest -L binary --output-on-failure | |
# | |
# - name: limited script tests | |
# run: cd build && ctest -L pythonci --output-on-failure | |
- name: check command documentation | |
run: ./docs/generate_user_docs.sh --build-dir build && git diff --exit-code docs/ | |
linux-gcc-build: | |
runs-on: ubuntu-latest | |
env: | |
QT_SELECT: qt6 | |
SCCACHE_GHA_ENABLED: "true" | |
SCCACHE_CACHE_SIZE: "2G" | |
steps: | |
- uses: actions/checkout@v1 | |
with: | |
submodules: true | |
- name: install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install g++-9 qt6-base-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev ninja-build python3-numpy | |
- name: Run sccache-cache | |
uses: mozilla-actions/sccache-action@v0.0.4 | |
- name: Get CMake | |
uses: lukka/get-cmake@latest | |
with: | |
cmakeVersion: '3.16.3' | |
- name: Print CMake version | |
run: cmake --version | |
- name: configure | |
run: > | |
cmake | |
-B build | |
-G Ninja | |
-D CMAKE_BUILD_TYPE=Release | |
-D MRTRIX_BUILD_TESTS=ON | |
-D MRTRIX_STL_DEBUGGING=ON | |
-D MRTRIX_WARNINGS_AS_ERRORS=ON | |
- name: build | |
run: cmake --build build | |
- name: unit tests | |
run: cd build && ctest -L unittest --output-on-failure | |
- name: binary tests | |
run: cd build && ctest -L binary --output-on-failure | |
# | |
# - name: limited script tests | |
# run: cd build && ctest -L pythonci --output-on-failure | |
macos-build: | |
runs-on: macos-latest | |
env: | |
SCCACHE_GHA_ENABLED: "true" | |
SCCACHE_CACHE_SIZE: "2G" | |
steps: | |
- uses: actions/checkout@v1 | |
with: | |
submodules: true | |
- name: install dependencies | |
run: | | |
brew bundle --file=${{ github.workspace }}/.brewfile | |
brew link --force qt | |
brew install numpy | |
- name: Run sccache-cache | |
uses: mozilla-actions/sccache-action@v0.0.4 | |
- name: Get CMake | |
uses: lukka/get-cmake@latest | |
with: | |
cmakeVersion: '3.21.0' | |
- name: Print CMake version | |
run: cmake --version | |
- name: configure | |
run: > | |
export PATH=/usr/local/opt/qt/bin:$PATH; | |
cmake | |
-B build | |
-G Ninja | |
-D CMAKE_BUILD_TYPE=Release | |
-D MRTRIX_BUILD_TESTS=ON | |
-D MRTRIX_STL_DEBUGGING=ON | |
-D MRTRIX_USE_PCH=OFF | |
-D MRTRIX_WARNINGS_AS_ERRORS=ON | |
- name: build | |
run: cmake --build build | |
- name: unit tests | |
run: cd build && ctest -L unittest --output-on-failure | |
- name: binary tests | |
run: cd build && ctest -L binary --output-on-failure | |
# | |
# - name: limited script tests | |
# run: cd build && ctest -L pythonci --output-on-failure | |
windows-build: | |
runs-on: windows-latest | |
defaults: | |
run: | |
shell: msys2 {0} | |
env: | |
CHERE_INVOKING: enabled_from_arguments | |
MINGW_PACKAGE_PREFIX: mingw-w64-ucrt-x86_64 | |
SCCACHE_GHA_ENABLED: "true" | |
SCCACHE_CACHE_SIZE: "2G" | |
SCCACHE_DIR: ${{ github.workspace }}/.sccache | |
steps: | |
- uses: actions/checkout@v1 | |
with: | |
submodules: true | |
- uses: msys2/setup-msys2@v2 | |
with: | |
msystem: UCRT64 | |
release: false | |
install: | | |
git | |
python | |
${{env.MINGW_PACKAGE_PREFIX}}-bc | |
${{env.MINGW_PACKAGE_PREFIX}}-cmake | |
${{env.MINGW_PACKAGE_PREFIX}}-diffutils | |
${{env.MINGW_PACKAGE_PREFIX}}-eigen3 | |
${{env.MINGW_PACKAGE_PREFIX}}-fftw | |
${{env.MINGW_PACKAGE_PREFIX}}-gcc | |
${{env.MINGW_PACKAGE_PREFIX}}-libtiff | |
${{env.MINGW_PACKAGE_PREFIX}}-ninja | |
${{env.MINGW_PACKAGE_PREFIX}}-pkg-config | |
${{env.MINGW_PACKAGE_PREFIX}}-qt6-base | |
${{env.MINGW_PACKAGE_PREFIX}}-qt6-svg | |
${{env.MINGW_PACKAGE_PREFIX}}-zlib | |
- name: Run sccache-cache | |
uses: mozilla-actions/sccache-action@v0.0.4 | |
- name: export sccache to msys2 shell | |
run: | | |
export SCCACHE_UNIX_PATH=$(cygpath -u "$SCCACHE_PATH") | |
echo "SCCACHE_UNIX_PATH=$SCCACHE_UNIX_PATH" >> $GITHUB_ENV | |
- name: configure | |
run: > | |
cmake | |
-B build | |
-G Ninja | |
-D CMAKE_BUILD_TYPE=Release | |
-D MRTRIX_BUILD_TESTS=ON | |
-D MRTRIX_STL_DEBUGGING=ON | |
-D MRTRIX_WARNINGS_AS_ERRORS=ON | |
-D CMAKE_CXX_COMPILER_LAUNCHER=${{env.SCCACHE_UNIX_PATH}} . | |
- name: build | |
run: cmake --build build | |
- name: unit tests | |
run: cd build && ctest -L unittest --output-on-failure | |
- name: binary tests | |
run: cd build && ctest -L binary --output-on-failure | |
# | |
# - name: limited script tests | |
# run: cd build && ctest -L pythonci --output-on-failure | |
secondary-checks: | |
runs-on: ubuntu-latest | |
env: | |
QT_SELECT: qt6 | |
steps: | |
- uses: actions/checkout@v1 | |
- name: install dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install pylint python3-sphinx sphinx-rtd-theme-common python3-recommonmark python3-sphinx-rtd-theme python3-pip python3-sphinx-notfound-page | |
- name: check syntax | |
run: ./check_syntax || { cat syntax.log; false; } | |
- name: pylint | |
run: | | |
echo "__version__ = 'pylint testing' #pylint: disable=unused-variable" > ./python/lib/mrtrix3/_version.py | |
./run_pylint || { cat pylint.log; false; } | |
- name: check copyright headers | |
run: ./update_copyright && git diff --exit-code | |
- name: check building of documentation | |
run: python3 -m sphinx -n -N -W -w sphinx.log docs/ tmp/ | |
- name: clang-format check | |
uses: DoozyX/clang-format-lint-action@v0.16.2 | |
with: | |
source: '.' | |
extensions: 'h,cpp' | |
clangFormatVersion: 16 | |
# Ignore third party headers | |
exclude: './core/file/json.h ./core/file/nifti1.h ./core/file/nifti2.h' | |