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dwifslpreproc: Handle non-ascii data in eddy error outputs #2313

Merged
merged 2 commits into from
May 6, 2021
Merged

dwifslpreproc: Handle non-ascii data in eddy error outputs #2313

merged 2 commits into from
May 6, 2021

Commits on May 6, 2021

  1. dwifslpreproc: Handle non-ascii data in eddy error outputs 

    The FSL eddy commands sometimes contain a small block of binary data at the end of their outputs. If, when attempting to write those data to a text file in the scratchh directory, an encoding operation occurs, such data may yield a UnicodeEncodeError. This commit changes the output text files to be opened in binary mode, so such an encoding should no longer be applied.
    @Lestropie
    Lestropie committed May 6, 2021
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  2. replace use of deprecated uint16/32 with uint16/32_t

    @jdtournier
    jdtournier committed May 6, 2021
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