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1. biobank-scale-methods-paper-2023 biobank-scale-methods-paper-2023 Public

   Public repository accompanying the publication "Biobank-scale methods and projections for sparse polygenic prediction from machine learning", containing code and predictors.

   Jupyter Notebook 2 1

2. biomarker-paper-2021 biomarker-paper-2021 Public

   Public reference code for the paper "Machine Learning Prediction of Blood and Urine Biomarkers from Genotype and of Disease Risk from Biomarkers in the UK Biobank".

   Jupyter Notebook 1

3. blockLASSO blockLASSO Public

   Public repository accompanying the publication "Efficient blockLASSO for Polygenic Scores with Applications to All of Us and UK Biobank", containing code and links to predictors.

   Python 1

4. lassoPipeline lassoPipeline Public

   This is the set of scripts that will subset phenotype files, create training/validation/testing sets, run gwas, run lasso and then score the final lasso output using genetic data.

   Python

5. sibling-variation-paper-2022 sibling-variation-paper-2022 Public

   Public reference repo for the paper "Sibling Variation in Phenotype and Genotype: Polygenic Trait Distributions and DNA Recombination Mapping with UK Biobank and IVF Family Data".