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Created JavaDocs, UML diagram, and a README for the project.
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@danielmachlab
danielmachlab committed Oct 7, 2017
1 parent 523b697 commit 4d9be84
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11 changes: 11 additions & 0 deletions ProSave.iml
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<?xml version="1.0" encoding="UTF-8"?>
<module type="JAVA_MODULE" version="4">
<component name="NewModuleRootManager" inherit-compiler-output="true">
<exclude-output />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
</component>
</module>
6 changes: 6 additions & 0 deletions README.md
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"# ProSave"
Put original data from excel into the text file named OriginalData located in the ProSave project's src
folder. Make sure every column of data has one word naming the column. Put list of proteins for comparison
in the text file named GetOriginalData located in the ProSave project's src folder. Make sure each protein
is on its own row.

280 changes: 280 additions & 0 deletions doc/ProSave.html
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (1.8.0_141) on Sat Oct 07 14:10:22 CDT 2017 -->
<title>ProSave</title>
<meta name="date" content="2017-10-07">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
<script type="text/javascript" src="script.js"></script>
</head>
<body>
<script type="text/javascript"><!--
try {
if (location.href.indexOf('is-external=true') == -1) {
parent.document.title="ProSave";
}
}
catch(err) {
}
//-->
var methods = {"i0":9};
var tabs = {65535:["t0","All Methods"],1:["t1","Static Methods"],8:["t4","Concrete Methods"]};
var altColor = "altColor";
var rowColor = "rowColor";
var tableTab = "tableTab";
var activeTableTab = "activeTableTab";
</script>
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<div class="header">
<h2 title="Class ProSave" class="title">Class ProSave</h2>
</div>
<div class="contentContainer">
<ul class="inheritance">
<li>java.lang.Object</li>
<li>
<ul class="inheritance">
<li>ProSave</li>
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<pre>public class <span class="typeNameLabel">ProSave</span>
extends java.lang.Object</pre>
<dl>
<dt><span class="simpleTagLabel">Author:</span></dt>
<dd>Daniel Machlab
The ProSave class is the ProSave program driver class. ProSave returns protein data lost from original data set. Inputs an bare subset of proteins derived from the origina
data and returns the subset of proteins with all data points. Intended use as a tool to determine the spectral count
of each individual protein unique to a tissue region.</dd>
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<h3>Constructor Summary</h3>
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<caption><span>Constructors</span><span class="tabEnd">&nbsp;</span></caption>
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<th class="colOne" scope="col">Constructor and Description</th>
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<td class="colOne"><code><span class="memberNameLink"><a href="ProSave.html#ProSave--">ProSave</a></span>()</code>&nbsp;</td>
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<td class="colFirst"><code>static void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="ProSave.html#main-java.lang.String:A-">main</a></span>(java.lang.String[]&nbsp;args)</code>
<div class="block">ProSave class main method.</div>
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<h3>Methods inherited from class&nbsp;java.lang.Object</h3>
<code>clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
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<h4>ProSave</h4>
<pre>public&nbsp;ProSave()</pre>
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<h4>main</h4>
<pre>public static&nbsp;void&nbsp;main(java.lang.String[]&nbsp;args)</pre>
<div class="block">ProSave class main method.</div>
<dl>
<dt><span class="paramLabel">Parameters:</span></dt>
<dd><code>args</code> - None.</dd>
</dl>
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