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BTRIM

de Bruijn graph TRIMming tool

License

This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph.

You can use BCALM2 to compute such a graph.



Usage:

[Unitig file] [kmer size] [tipping length (100)] [core used (1)] [hash size, use 2^h files (8)]











To do list:

-Remove ascII representation

-Better multithreading





Mr. Pink: Uh-uh, I don't tip.

Nice Guy Eddie: You don't tip?

Mr. Pink: I don't believe in it.

Nice Guy Eddie: You don't believe in tipping?