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Added goseq and Ensembl data libs
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Added goseq for basic GO analysis and Ensembl databases for
AnnotationDBi-based annotation.
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MarcSaric committed Apr 27, 2019
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2 changes: 1 addition & 1 deletion deseq2-biocparallel-notebook/Dockerfile
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Expand Up @@ -20,7 +20,7 @@ RUN R -e 'install.packages(c("pheatmap", "fastcluster"), repo = "https://cloud.r
# Add DESeq2 dependencies from Bioconductor
# For historic reasons DESeq2 is already in the datascience-notebook
RUN R -e 'source("https://bioconductor.org/biocLite.R");\
biocLite(c("apeglm", "BiocParallel", "DEGreport", "vsn"))'
biocLite(c("apeglm", "BiocParallel", "DEGreport", "vsn", "goseq", "EnsDb.Hsapiens.v79", "org.Hs.eg.db"))'



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