MatteoSchiavinato / Utilities Public

General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)

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Name		Name	Last commit message	Last commit date
Latest commit History 46 Commits
README.md		README.md
SNP-dogg		SNP-dogg
SNP-dogg-v2.0		SNP-dogg-v2.0
add-read-groups.py		add-read-groups.py
alignment-score-filter.py		alignment-score-filter.py
estimate-insert-size.Rscript		estimate-insert-size.Rscript
explicitate-psl-format.py		explicitate-psl-format.py
extract-coordinate-boundaries.py		extract-coordinate-boundaries.py
feature-dimensions.py		feature-dimensions.py
generate-fake-reads.py		generate-fake-reads.py
gff-overlap.py		gff-overlap.py
gff2fasta.py		gff2fasta.py
hasher		hasher
keep-only-listed-genes.py		keep-only-listed-genes.py
kraken2table		kraken2table
model.Rplot		model.Rplot
my-mummer-2-vcf.py		my-mummer-2-vcf.py
non-redundant-feature-length.py		non-redundant-feature-length.py
plot-coverage.Rscript		plot-coverage.Rscript
plot-distribution.Rscript		plot-distribution.Rscript
psl-choose-best.py		psl-choose-best.py
readcount		readcount
select-sequences-from-filename.py		select-sequences-from-filename.py
table-integrator.py		table-integrator.py

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Utilities

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General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)

python bioinformatics r tools fasta bam

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