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Vladimir Reinharz
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Sep 20, 2012
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.DS_Store |
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SRC_DIR = src | ||
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SRC_C_FILES = src/constraints.c src/RNAmutants.c src/util.c src/sampling.c src/mfe_backtrack.c src/energy_functions.c src/reader_energy_params.c src/hybrid.c | ||
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SRC_H_FILES = src/util.h src/constraints.h src/sampling.h src/reader_energy_params.h src/energy_params_tables.h src/mfe_backtrack.h src/RNAmutants.h src/energy_functions.h src/hybrid.h | ||
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all : RNAmutants | ||
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RNAmutants : $(SRC_C_FILES) $(SRC_H_FILES) | ||
(cd $(SRC_DIR) && $(MAKE) $@) || exit 1;\ | ||
(mv $(SRC_DIR)/RNAmutants .) || exit 1 | ||
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clean : | ||
(cd $(SRC_DIR) && $(MAKE) $@) || exit 1;\ | ||
(rm -f *~) || exit 1 |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,96 @@ | ||
3.90 3.70 3.10 5.50 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 | ||
3.80 3.70 5.50 3.70 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 | ||
3.20 5.50 2.30 5.50 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
3.60 3.20 3.10 5.50 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 | ||
3.70 4.00 5.50 3.70 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.70 5.50 2.80 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 | ||
2.50 2.10 1.90 5.50 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
2.30 5.50 3.70 5.50 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
4.00 3.40 5.50 3.70 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.20 5.50 2.70 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 | ||
3.20 3.00 2.40 4.80 2.30 2.20 1.10 4.00 2.40 2.20 1.60 4.00 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 | ||
3.10 3.00 4.80 3.00 2.30 2.20 4.00 2.20 2.30 2.20 4.00 2.20 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 | ||
2.50 4.80 1.60 4.80 1.70 4.00 0.80 4.00 1.70 4.00 0.80 4.00 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
2.90 2.50 2.40 4.80 2.10 1.70 1.60 4.00 2.10 1.70 1.60 4.00 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 | ||
3.00 3.30 4.80 3.00 2.20 2.50 4.00 2.20 2.20 2.50 4.00 2.20 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
4.80 3.00 4.80 2.10 4.00 2.20 4.00 1.50 4.00 2.20 4.00 1.30 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 | ||
1.80 1.40 1.20 4.80 0.80 0.60 0.40 4.00 1.00 0.60 0.40 4.00 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
1.60 4.80 3.00 4.80 0.80 4.00 2.20 4.00 0.80 4.00 2.20 4.00 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
3.30 2.70 4.80 3.00 2.50 1.90 4.00 2.20 2.50 1.90 4.00 2.20 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
4.80 2.50 4.80 2.00 4.00 1.70 4.00 1.20 4.00 1.70 4.00 1.20 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 | ||
3.20 3.00 2.40 4.80 2.40 2.20 1.60 4.00 2.50 2.20 2.10 4.00 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 | ||
3.10 3.00 4.80 3.00 2.30 2.20 4.00 2.20 2.30 2.20 4.00 2.20 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 | ||
2.50 4.80 1.60 4.80 1.70 4.00 0.80 4.00 1.70 4.00 0.80 4.00 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
2.90 2.50 2.40 4.80 2.10 1.70 1.60 4.00 2.10 1.70 1.60 4.00 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 | ||
3.00 3.30 4.80 3.00 2.20 2.50 4.00 2.20 2.20 2.50 4.00 2.20 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
4.80 3.00 4.80 2.10 4.00 2.20 4.00 1.30 4.00 2.20 4.00 1.20 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 | ||
1.80 1.40 1.20 4.80 1.00 0.60 0.40 4.00 1.20 0.60 0.40 4.00 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
1.60 4.80 3.00 4.80 0.80 4.00 2.20 4.00 0.80 4.00 2.20 4.00 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
3.30 2.70 4.80 3.00 2.50 1.90 4.00 2.20 2.50 1.90 4.00 2.20 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 | ||
4.80 4.80 4.80 4.80 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.00 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 | ||
4.80 2.50 4.80 2.00 4.00 1.70 4.00 1.20 4.00 1.70 4.00 1.20 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 | ||
3.90 3.70 3.10 5.50 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 | ||
3.80 3.70 5.50 3.70 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 | ||
3.20 5.50 2.30 5.50 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
3.60 3.20 3.10 5.50 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 | ||
3.70 4.00 5.50 3.70 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.70 5.50 2.80 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 | ||
2.50 2.10 1.90 5.50 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
2.30 5.50 3.70 5.50 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
4.00 3.40 5.50 3.70 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.20 5.50 2.70 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 | ||
3.90 3.70 3.10 5.50 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 | ||
3.80 3.70 5.50 3.70 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 | ||
3.20 5.50 2.30 5.50 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
3.60 3.20 3.10 5.50 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 | ||
3.70 4.00 5.50 3.70 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.70 5.50 2.80 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 | ||
2.50 2.10 1.90 5.50 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
2.30 5.50 3.70 5.50 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
4.00 3.40 5.50 3.70 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.20 5.50 2.70 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 | ||
3.90 3.70 3.10 5.50 3.20 3.00 2.40 4.80 3.20 3.00 2.40 4.80 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 3.90 3.70 3.10 5.50 | ||
3.80 3.70 5.50 3.70 3.10 3.00 4.80 3.00 3.10 3.00 4.80 3.00 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 3.80 3.70 5.50 3.70 | ||
3.20 5.50 2.30 5.50 2.50 4.80 1.60 4.80 2.50 4.80 1.60 4.80 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 3.20 5.50 2.30 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
3.60 3.20 3.10 5.50 2.90 2.50 2.40 4.80 2.90 2.50 2.40 4.80 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 3.60 3.20 3.10 5.50 | ||
3.70 4.00 5.50 3.70 3.00 3.30 4.80 3.00 3.00 3.30 4.80 3.00 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 3.70 4.00 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.70 5.50 2.80 4.80 3.00 4.80 2.10 4.80 3.00 4.80 2.10 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 5.50 3.70 5.50 2.80 | ||
2.50 2.10 1.90 5.50 1.80 1.40 1.20 4.80 1.80 1.40 1.20 4.80 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 2.50 2.10 1.90 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
2.30 5.50 3.70 5.50 1.60 4.80 3.00 4.80 1.60 4.80 3.00 4.80 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 2.30 5.50 3.70 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
4.00 3.40 5.50 3.70 3.30 2.70 4.80 3.00 3.30 2.70 4.80 3.00 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 4.00 3.40 5.50 3.70 | ||
5.50 5.50 5.50 5.50 4.80 4.80 4.80 4.80 4.80 4.80 4.80 4.80 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 5.50 | ||
5.50 3.20 5.50 2.70 4.80 2.50 4.80 2.00 4.80 2.50 4.80 2.00 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 5.50 3.20 5.50 2.70 |
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/ __ `__ \/ /_/ __ \/ / __ / | ||
/ / / / / / __/ /_/ / / /_/ / | ||
/_/ /_/ /_/_/ \____/_/\__,_/ | ||
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_ _____ ___ | ||
_ _____ __________(_)___ ____ |__ / < / | ||
| | / / _ \/ ___/ ___/ / __ \/ __ \ /_ < / / | ||
| |/ / __/ / (__ ) / /_/ / / / / ___/ / / / | ||
|___/\___/_/ /____/_/\____/_/ /_/ /____(_)_/ | ||
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,72 @@ | ||
Data Arangement: | ||
|
||
Y | ||
------------------ | ||
(X) A C G U | ||
------------------ | ||
5' ==> 3' | ||
AX | ||
AY | ||
3' <== 5' | ||
(A) . . . . | ||
(C) . . . . | ||
(G) . . . . | ||
(U) -0.70 -0.10 -0.70 -0.10 | ||
|
||
-------------------------------- | ||
STACKING ENERGIES : | ||
|
||
Y Y Y Y | ||
------------------ ------------------ ------------------ ------------------ | ||
A C G U A C G U A C G U A C G U | ||
------------------ ------------------ ------------------ ------------------ | ||
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' | ||
AX AX AX AX | ||
AY CY GY UY | ||
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' | ||
. . . . . . . . . . . . . . . -0.90 | ||
. . . . . . . . . . . . . . -2.20 . | ||
. . . . . . . . . . . . . -2.10 . -0.60 | ||
. . . . . . . . . . . . -1.10 . -1.40 . | ||
|
||
|
||
Y Y Y Y | ||
------------------ ------------------ ------------------ ------------------ | ||
A C G U A C G U A C G U A C G U | ||
------------------ ------------------ ------------------ ------------------ | ||
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' | ||
CX CX CX CX | ||
AY CY GY UY | ||
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' | ||
. . . . . . . . . . . -2.10 . . . . | ||
. . . . . . . . . . -3.30 . . . . . | ||
. . . . . . . . . -2.40 . -1.40 . . . . | ||
. . . . . . . . -2.10 . -2.10 . . . . . | ||
|
||
|
||
Y Y Y Y | ||
------------------ ------------------ ------------------ ------------------ | ||
A C G U A C G U A C G U A C G U | ||
------------------ ------------------ ------------------ ------------------ | ||
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' | ||
GX GX GX GX | ||
AY CY GY UY | ||
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' | ||
. . . . . . . -2.40 . . . . . . . -1.30 | ||
. . . . . . -3.40 . . . . . . . -2.50 . | ||
. . . . . -3.30 . -1.50 . . . . . -2.10 . -0.50 | ||
. . . . -2.20 . -2.50 . . . . . -1.40 . 1.30 . | ||
|
||
|
||
Y Y Y Y | ||
------------------ ------------------ ------------------ ------------------ | ||
A C G U A C G U A C G U A C G U | ||
------------------ ------------------ ------------------ ------------------ | ||
5' --> 3' 5' --> 3' 5' --> 3' 5' --> 3' | ||
UX UX UX UX | ||
AY CY GY UY | ||
3' <-- 5' 3' <-- 5' 3' <-- 5' 3' <-- 5' | ||
. . . -1.30 . . . . . . . -1.00 . . . . | ||
. . -2.40 . . . . . . . -1.50 . . . . . | ||
. -2.10 . -1.00 . . . . . -1.40 . 0.30 . . . . | ||
-0.90 . -1.30 . . . . . -0.60 . -0.50 . . . . . |
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