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Update README.md
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MigleSur committed Sep 5, 2019
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Expand Up @@ -81,7 +81,7 @@ If there are less than 4 samples, RAxML phylogenetic analysis and ClonalFrame re

## Running the pipeline

In order to run the pipeline anaconda3 (version 4.0.0) has to be available. Snakemake is started from its directory directory:
In order to run the pipeline anaconda3 (version 4.0.0) has to be available. Snakemake is started from its directory:

```
-j option allows to choose the number of threads (1-28) used for the analysis (default:1)
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