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Efficient estimation of detailed single-neuron models (Huys et al. 2006)
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INTRO ====================================================================== Infer full compartmental model given only access to the voltage in the compartments. This code is released in conjunction with the paper Huys QJM, Ahrens M and Paninski L (2006): Efficient estimation of detailed single-neurone models and can be downloaded from http://www.gatsby.ucl.ac.uk/~qhuys/code.html The paper can be downloaded from http://www.gatsby.ucl.ac.uk/~qhuys/pub/hap06.pdf Copyright Quentin Huys 2006 qhuys@gatsby.ucl.ac.uk HOW TO ====================================================================== To use the code, unzip it, eg on a linux machine type gunzip hap06_code.gz Which will create a directory with all the files. From within Matlab, change to that directory by typing eg cd hap06_code Edit the file PARAM.M to change any parameters you want, like the number of compartments in the cell, the size of each compartment, the amount of noise etc. You should not have to edit any of the other files. To run the inference, simply type main and hit ENTER. Enjoy. BUGS ====================================================================== I don't know of any bugs at the moment, but please do let me know if you find any (qhuys@gatsby.ucl.ac.uk)
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