PyMOL Python snippets for the Classic Jupyter Notebook

Features

The 250 snippets are installed in the single JavaScript file, custom.js. It is assumed you have the nbextensions module installed and the snippets_menu extension activated.

The snippets are in cascading pull-down menus. A preview (see the gray box below) of the selected snippet is displayed before you hit enter to insert it in the current code cell.

Installation and usage

• git clone this repository.
• Copy custom.js to ~/.jupytedssadr/custom/custom.js.
• Start jupyter notebook (versions 6 and older)
• Start jupyter nbclassic (Juyter Notebook version 7 or newer).
• Select a snippet from the pymolpy menu edits in the nav bar.

Related repos

• [jupyternbclassicpymolpysnipsplus] (coming soon)
• taggedpymolpysnips
• [taggedpymolpysnipspymolpysnipsplus](coming soon)
• jupyter-vsc-pymolpysnips
• jupyter-st3-pymolpysnips
• jupyter-emacs-pymolpysnips
• jupyter-ultisnips-pymolpysnips
• jupyter-snipmate-pymolpysnips
• jupyter-neosnippets-pymolpysnips
• jupyter-atom-pymolpysnips

Note

Some snippets depend on some pymolshortcuts. Add the pymolshortcuts.py file to working working directory.