Updated tutorial documentation.

MoseleyBioinformaticsLab · Jan 11, 2017 · 4119752 · 4119752
1 parent 58ed6a3
commit 4119752
Showing 1 changed file with 58 additions and 58 deletions.
diff --git a/docs/tutorial.rst b/docs/tutorial.rst
@@ -327,69 +327,69 @@ using bracket accessors.
 
    >>> starfile.chem_shifts_by_residue()
    [OrderedDict([
-       (1, OrderedDict([('AA3Code', 'MET'),
-                        ('Seq_ID', 1),
-                        ('H', '8.55'),
-                        ('HA', '4.548'),
-                        ('HB2', '1.994'),
-                        ('HB3', '2.118'),
-                        ('CA', '55.489'),
-                        ('CB', '32.848'),
-                        ('N', '122.221')])),
-       (2, OrderedDict([('AA3Code', 'SER'),
-                        ('Seq_ID', 2),
-                        ('H', '8.225'),
-                        ('HA', '4.420'),
-                        ('HB2', '3.805'),
-                        ('HB3', '3.857'),
-                        ('CA', '58.593'),
-                        ('CB', '64.057'),
-                        ('N', '117.197')])),
-       (3, OrderedDict([('AA3Code', 'GLU'),
-                        ('Seq_ID', 3),
-                        ('H', '8.002'),
-                        ('HA', '4.848'),
-                        ('HB2', '1.852'),
-                        ('HB3', '1.963'),
-                        ('HG2', '1.981'),
-                        ('HG3', '2.191'),
-                        ('CA', '55.651'),
-                        ('CB', '32.952'),
-                        ('CG', '37.425'),
-                        ('N', '119.833')])), ...
+       ('1', OrderedDict([('AA3Code', 'MET'),
+                          ('Seq_ID', '1'),
+                          ('H', '8.55'),
+                          ('HA', '4.548'),
+                          ('HB2', '1.994'),
+                          ('HB3', '2.118'),
+                          ('CA', '55.489'),
+                          ('CB', '32.848'),
+                          ('N', '122.221')])),
+       ('2', OrderedDict([('AA3Code', 'SER'),
+                          ('Seq_ID', '2'),
+                          ('H', '8.225'),
+                          ('HA', '4.420'),
+                          ('HB2', '3.805'),
+                          ('HB3', '3.857'),
+                          ('CA', '58.593'),
+                          ('CB', '64.057'),
+                          ('N', '117.197')])),
+       ('3', OrderedDict([('AA3Code', 'GLU'),
+                          ('Seq_ID', '3'),
+                          ('H', '8.002'),
+                          ('HA', '4.848'),
+                          ('HB2', '1.852'),
+                          ('HB3', '1.963'),
+                          ('HG2', '1.981'),
+                          ('HG3', '2.191'),
+                          ('CA', '55.651'),
+                          ('CB', '32.952'),
+                          ('CG', '37.425'),
+                          ('N', '119.833')])), ...
    ...
    ]
    >>>
    >>> starfile.chem_shifts_by_residue(aminoacids=["SER"], atoms=["CA", "CB"])
    [OrderedDict([
-       (2, OrderedDict([('AA3Code', 'SER'),
-                        ('Seq_ID', 2),
-                        ('CA', '58.593'),
-                        ('CB', '64.057')])),
-       (8, OrderedDict([('AA3Code', 'SER'),
-                        ('Seq_ID', 8),
-                        ('CA', '57.456'),
-                        ('CB', '64.863')])),
-       (9, OrderedDict([('AA3Code', 'SER'),
-                        ('Seq_ID', 9),
-                        ('CA', '57.852'),
-                        ('CB', '67.332')])),
-       (34, OrderedDict([('AA3Code', 'SER'),
-                         ('Seq_ID', 34),
-                         ('CA', '59.113'),
-                         ('CB', '66.248')])),
-       (46, OrderedDict([('AA3Code', 'SER'),
-                         ('Seq_ID', 46),
-                         ('CA', '55.939'),
-                         ('CB', '66.829')])),
-       (95, OrderedDict([('AA3Code', 'SER'),
-                         ('Seq_ID', 95),
-                         ('CA', '57.013'),
-                         ('CB', '66.501')])),
-       (108, OrderedDict([('AA3Code', 'SER'),
-                         ('Seq_ID', 108),
-                         ('CA', '61.617'),
-                         ('CB', '62.493')]))])
+       ('2', OrderedDict([('AA3Code', 'SER'),
+                          ('Seq_ID', '2'),
+                          ('CA', '58.593'),
+                          ('CB', '64.057')])),
+       ('8', OrderedDict([('AA3Code', 'SER'),
+                          ('Seq_ID', '8'),
+                          ('CA', '57.456'),
+                          ('CB', '64.863')])),
+       ('9', OrderedDict([('AA3Code', 'SER'),
+                          ('Seq_ID', '9'),
+                          ('CA', '57.852'),
+                          ('CB', '67.332')])),
+       ('34', OrderedDict([('AA3Code', 'SER'),
+                           ('Seq_ID', '34'),
+                           ('CA', '59.113'),
+                           ('CB', '66.248')])),
+       ('46', OrderedDict([('AA3Code', 'SER'),
+                           ('Seq_ID', '46'),
+                           ('CA', '55.939'),
+                           ('CB', '66.829')])),
+       ('95', OrderedDict([('AA3Code', 'SER'),
+                           ('Seq_ID', '95'),
+                           ('CA', '57.013'),
+                           ('CB', '66.501')])),
+       ('108', OrderedDict([('AA3Code', 'SER'),
+                            ('Seq_ID', '108'),
+                            ('CA', '61.617'),
+                            ('CB', '62.493')]))])
    ]
    >>>