Merge pull request #1777 from SusiJo/bcftools_stats_depth

Remove empty bcftools stats variant depths plot
MultiQC · Oct 10, 2022 · b936a7a · b936a7a
2 parents 6397a62 + db062ef
commit b936a7a
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -37,6 +37,8 @@
   - Catch zero division in sambamba markdup ([#1654](https://github.com/ewels/MultiQC/issues/1654))
 - **Samtools**
   - Added additional (by default hidden) column for `flagstat` that displays percentage of mapped reads in a bam ([#1733](https://github.com/ewels/MultiQC/issues/1733))
+- **Bcftools stats**
+  - Bugfix: Do not show empty bcftools stats variant depth plots[#1777](https://github.com/ewels/MultiQC/pull/1777)
 
 ## [MultiQC v1.13](https://github.com/ewels/MultiQC/releases/tag/v1.13) - 2022-09-08
 

diff --git a/multiqc/modules/bcftools/stats.py b/multiqc/modules/bcftools/stats.py
@@ -187,6 +187,7 @@ def parse_bcftools_stats(self):
         self.bcftools_stats_vqc_transi = {k: v for k, v in self.bcftools_stats_vqc_transi.items() if len(v) > 0}
         self.bcftools_stats_vqc_transv = {k: v for k, v in self.bcftools_stats_vqc_transv.items() if len(v) > 0}
         self.bcftools_stats_vqc_indels = {k: v for k, v in self.bcftools_stats_vqc_indels.items() if len(v) > 0}
+        depth_data = {k: v for k, v in depth_data.items() if len(v) > 0}
 
         # Filter to strip out ignored sample names
         self.bcftools_stats = self.ignore_samples(self.bcftools_stats)