Hifiasm: account for lines with no asterisk (#2268)

* changed hifiasm module to account for lines with no asterisk

* [automated] Update CHANGELOG.md

* [automated] Update CHANGELOG.md

---------

Co-authored-by: Michael Beavitt <mbeavitt@b-hiveinnovations.co.uk>
Co-authored-by: MultiQC Bot <multiqc-bot@seqera.io>

CHANGELOG.md

@@ -18,11 +18,12 @@
 
 ### Module updates
 
-- **mosdepth**: Add additional summaries to general stats #2257 ([#2257](https://github.com/MultiQC/MultiQC/pull/2257))
-- **Seqera Platform CLI**: Updates for v0.9.2 ([#2248](https://github.com/MultiQC/MultiQC/pull/2248))
-- **Bismark**: fix old link in docs ([#2252](https://github.com/MultiQC/MultiQC/pull/2252))
 - **BclConvert**: fix duplicated `yield` for 3.9.3+ when the yield is provided explicitly in Quality_Metrics ([#2253](https://github.com/MultiQC/MultiQC/pull/2253))
+- **Bismark**: fix old link in docs ([#2252](https://github.com/MultiQC/MultiQC/pull/2252))
+- **HiFiasm**: account for lines with no asterisk ([#2268](https://github.com/MultiQC/MultiQC/pull/2268))
+- **mosdepth**: Add additional summaries to general stats #2257 ([#2257](https://github.com/MultiQC/MultiQC/pull/2257))
 - **Picard**: fix using multiple times in report: do not pass `module.anchor` to `self.find_log_files` ([#2255](https://github.com/MultiQC/MultiQC/pull/2255))
+- **Seqera Platform CLI**: Updates for v0.9.2 ([#2248](https://github.com/MultiQC/MultiQC/pull/2248))
 
 ## [MultiQC v1.19](https://github.com/ewels/MultiQC/releases/tag/v1.19) - 2023-12-18
 

multiqc/modules/hifiasm/hifiasm.py

@@ -100,8 +100,11 @@ def extract_kmer_graph(self, fin):
                 # Special case
                 if occurrence == "rest":
                     continue
-                # Count of the occurrence
-                count = int(spline[3])
+                # Count of the occurrence, checking for lines with no asterisk before count.
+                if "*" in spline[2]:
+                    count = int(spline[3])
+                else:
+                    count = int(spline[2])
                 data[int(occurrence)] = count
             # If we are no longer in the histogram
             elif found_histogram: