seqwho

[vsmalladi]

Tool Details

• Name of tool: seqwho
• Tool homepage: https://git.biohpc.swmed.edu/s181649/seqwho
• Tool description: Type Sequence files for species and assay
• Data suitable for MultiQC plot(s): fastqc like plots
• Most interesting data for General Stats table: Inferred Sequence Type, Inferred Species

Tool output:
TSV file of stats
PDF file of figures

• Log filename pattern:
• File contents:

[vsmalladi]

Graphs simiarl to fastqc:

1. %GC content
2. Average Read quality
3. Number of reads in the file
4. sequence/adapter content

[ewels]

Hi @vsmalladi,

Please attach some example output files and answer the template questions about standardised filenames.

Many thanks,

Phil

[vsmalladi]

log files are SeqWho_call.json or SeqWho_call.tsv

Attached is the tsv example version
SeqWho_call_example.txt