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bbmap: adapter stats with additional columns.
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data/modules/bbmap/issue_1556/mRNA_OXBv19_S19_adapter_stats.txt
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| #File /data/sdb1/Lenti_sequencing/RNASEQ-LV001/runs/mRNA/CTL019_OXBLV4_mRNA/pretrim/mRNA_OXBv19_S19_1.fastq.gz /data/sdb1/Lenti_sequencing/RNASEQ-LV001/runs/mRNA/CTL019_OXBLV4_mRNA/pretrim/mRNA_OXBv19_S19_2.fastq.gz | ||
| #Total 50541602 7581240300 | ||
| #Matched 20143179 39.85465% | ||
| #Name Reads ReadsPct Bases BasesPct | ||
| Reverse_adapter 8214013 16.25198% 1232101950 16.25198% | ||
| pcr_dimer 4442327 8.78945% 666349050 8.78945% | ||
| PCR_Primers 3374847 6.67736% 506227050 6.67736% | ||
| TruSeq_Adapter_Index_1_6 2674887 5.29245% 401233050 5.29245% | ||
| Nextera_LMP_Read2_External_Adapter 1153135 2.28156% 172970250 2.28156% | ||
| TruSeq_Universal_Adapter 240160 0.47517% 36024000 0.47517% | ||
| TruSeq_Adapter_Index_9 7806 0.01544% 1170900 0.01544% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]504 7393 0.01463% 1108950 0.01463% | ||
| TruSeq_Adapter_Index_10 4818 0.00953% 722700 0.00953% | ||
| TruSeq_Adapter_Index_6 4517 0.00894% 677550 0.00894% | ||
| Illumina Small RNA v1.5 3p Adapter 4291 0.00849% 643650 0.00849% | ||
| Bisulfite_R1 2942 0.00582% 441300 0.00582% | ||
| Bisulfite_R2 2739 0.00542% 410850 0.00542% | ||
| Nextera_LMP_Read1_External_Adapter 1986 0.00393% 297900 0.00393% | ||
| I7_Nextera_Transposase_2 1495 0.00296% 224250 0.00296% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]505 763 0.00151% 114450 0.00151% | ||
| PhiX_read2_adapter 745 0.00147% 111750 0.00147% | ||
| PhiX_read1_adapter 644 0.00127% 96600 0.00127% | ||
| I5_Nextera_Transposase_1 426 0.00084% 63900 0.00084% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]501 337 0.00067% 50550 0.00067% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S510 325 0.00064% 48750 0.00064% | ||
| RNA_Adapter_(RA5)_part_#_15013205 294 0.00058% 44100 0.00058% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N701 288 0.00057% 43200 0.00057% | ||
| I5_Nextera_Transposase_2 239 0.00047% 35850 0.00047% | ||
| I5_Adapter_Nextera 188 0.00037% 28200 0.00037% | ||
| I7_Adapter_Nextera_No_Barcode 184 0.00036% 27600 0.00036% | ||
| TruSeq_Adapter_Index_3 114 0.00023% 17100 0.00023% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S518 113 0.00022% 16950 0.00022% | ||
| RNA_PCR_Primer_(RP1)_part_#_15013198 103 0.00020% 15450 0.00020% | ||
| TruSeq_Adapter_Index_2 93 0.00018% 13950 0.00018% | ||
| I7_Nextera_Transposase_1 83 0.00016% 12450 0.00016% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S521 73 0.00014% 10950 0.00014% | ||
| RNA_PCR_Primer_Index_1_(RPI1)_2,9 63 0.00012% 9450 0.00012% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]507 60 0.00012% 9000 0.00012% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]502 54 0.00011% 8100 0.00011% | ||
| TruSeq_Adapter_Index_23 48 0.00009% 7200 0.00009% | ||
| TruSeq_Adapter_Index_7 37 0.00007% 5550 0.00007% | ||
| RNA_PCR_Primer_Index_25_(RPI25) 35 0.00007% 5250 0.00007% | ||
| TruSeq_Adapter_Index_8 34 0.00007% 5100 0.00007% | ||
| RNA_PCR_Primer_Index_28_(RPI28) 33 0.00007% 4950 0.00007% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S522 30 0.00006% 4500 0.00006% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N729 26 0.00005% 3900 0.00005% | ||
| TruSeq_Adapter_Index_5 25 0.00005% 3750 0.00005% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N709 24 0.00005% 3600 0.00005% | ||
| TruSeq_Adapter_Index_12 23 0.00005% 3450 0.00005% | ||
| RNA_PCR_Primer_Index_31_(RPI31) 22 0.00004% 3300 0.00004% | ||
| RNA_PCR_Primer_Index_24_(RPI24) 21 0.00004% 3150 0.00004% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]508 19 0.00004% 2850 0.00004% | ||
| TruSeq_Adapter_Index_13 19 0.00004% 2850 0.00004% | ||
| RNA_PCR_Primer_Index_32_(RPI32) 18 0.00004% 2700 0.00004% | ||
| RNA_PCR_Primer_Index_43_(RPI43) 18 0.00004% 2700 0.00004% | ||
| TruSeq_Adapter_Index_16 14 0.00003% 2100 0.00003% | ||
| TruSeq_Adapter_Index_18_7 14 0.00003% 2100 0.00003% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]503 12 0.00002% 1800 0.00002% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N708 12 0.00002% 1800 0.00002% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S515 11 0.00002% 1650 0.00002% | ||
| TruSeq_Adapter_Index_14 11 0.00002% 1650 0.00002% | ||
| TruSeq_Adapter_Index_27 11 0.00002% 1650 0.00002% | ||
| TruSeq_Adapter_Index_4 10 0.00002% 1500 0.00002% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S520 9 0.00002% 1350 0.00002% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]517 9 0.00002% 1350 0.00002% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N716 9 0.00002% 1350 0.00002% | ||
| TruSeq_Adapter_Index_11 6 0.00001% 900 0.00001% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N718 5 0.00001% 750 0.00001% | ||
| RNA_PCR_Primer_Index_13_(RPI13) 5 0.00001% 750 0.00001% | ||
| RNA_PCR_Primer_Index_37_(RPI37) 5 0.00001% 750 0.00001% | ||
| TruSeq_Adapter_Index_19 5 0.00001% 750 0.00001% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S513 4 0.00001% 600 0.00001% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N704 4 0.00001% 600 0.00001% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S516 3 0.00001% 450 0.00001% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N710 3 0.00001% 450 0.00001% | ||
| TruSeq_Adapter_Index_15 3 0.00001% 450 0.00001% | ||
| TruSeq_Adapter_Index_25 3 0.00001% 450 0.00001% | ||
| I5_Primer_Nextera_XT_and_Nextera_Enrichment_[N/S/E]506 2 0.00000% 300 0.00000% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N721 2 0.00000% 300 0.00000% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N727 2 0.00000% 300 0.00000% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N705 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_15_(RPI15) 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_17_(RPI17) 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_22_(RPI22) 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_27_(RPI27) 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_34_(RPI34) 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_39_(RPI39) 2 0.00000% 300 0.00000% | ||
| RNA_PCR_Primer_Index_7_(RPI7) 2 0.00000% 300 0.00000% | ||
| I5_Primer_Nextera_XT_Index_Kit_v2_S511 1 0.00000% 150 0.00000% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N719 1 0.00000% 150 0.00000% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N722 1 0.00000% 150 0.00000% | ||
| I7_Primer_Nextera_XT_Index_Kit_v2_N726 1 0.00000% 150 0.00000% | ||
| I7_Primer_Nextera_XT_and_Nextera_Enrichment_N702 1 0.00000% 150 0.00000% | ||
| RNA_PCR_Primer_Index_33_(RPI33) 1 0.00000% 150 0.00000% | ||
| RNA_PCR_Primer_Index_35_(RPI35) 1 0.00000% 150 0.00000% | ||
| RNA_PCR_Primer_Index_36_(RPI36) 1 0.00000% 150 0.00000% | ||
| RNA_PCR_Primer_Index_48_(RPI48) 1 0.00000% 150 0.00000% | ||
| TruSeq_Adapter_Index_20 1 0.00000% 150 0.00000% | ||
| TruSeq_Adapter_Index_21 1 0.00000% 150 0.00000% | ||
| TruSeq_Adapter_Index_22 1 0.00000% 150 0.00000% |