Viralrecon example: replace with a zip archive

MultiQC · May 1, 2024 · 8f68e8b · 8f68e8b
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diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_1_fastqc.html b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_1_fastqc.html
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_1_fastqc.zip b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_1_fastqc.zip
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_2_fastqc.html b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_2_fastqc.html
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_2_fastqc.zip b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE1_PE.primer_trim_2_fastqc.zip
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_1_fastqc.html b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_1_fastqc.html
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_1_fastqc.zip b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_1_fastqc.zip
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_2_fastqc.html b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_2_fastqc.html
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_2_fastqc.zip b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE2_PE.primer_trim_2_fastqc.zip
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE3_SE.primer_trim_fastqc.html b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE3_SE.primer_trim_fastqc.html
diff --git a/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE3_SE.primer_trim_fastqc.zip b/public/examples/viralrecon/assembly/cutadapt/fastqc/SAMPLE3_SE.primer_trim_fastqc.zip
diff --git a/public/examples/viralrecon/assembly/cutadapt/log/SAMPLE1_PE.primer_trim.cutadapt.log b/public/examples/viralrecon/assembly/cutadapt/log/SAMPLE1_PE.primer_trim.cutadapt.log
diff --git a/public/examples/viralrecon/assembly/cutadapt/log/SAMPLE2_PE.primer_trim.cutadapt.log b/public/examples/viralrecon/assembly/cutadapt/log/SAMPLE2_PE.primer_trim.cutadapt.log
diff --git a/public/examples/viralrecon/assembly/cutadapt/log/SAMPLE3_SE.primer_trim.cutadapt.log b/public/examples/viralrecon/assembly/cutadapt/log/SAMPLE3_SE.primer_trim.cutadapt.log
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/aligned_stats/NAx_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/aligned_stats/NAx_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/aligned_stats/NGAx_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/aligned_stats/NGAx_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/aligned_stats/cumulative_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/aligned_stats/cumulative_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/GC_content_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/GC_content_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/NGx_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/NGx_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/Nx_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/Nx_plot.pdf
diff --git a/...on/assembly/spades/rnaviral/quast/basic_stats/SAMPLE1_PE-scaffolds_coverage_histogram.pdf b/...on/assembly/spades/rnaviral/quast/basic_stats/SAMPLE1_PE-scaffolds_coverage_histogram.pdf
diff --git a/...recon/assembly/spades/rnaviral/quast/basic_stats/SAMPLE1_PE.scaffolds_GC_content_plot.pdf b/...recon/assembly/spades/rnaviral/quast/basic_stats/SAMPLE1_PE.scaffolds_GC_content_plot.pdf
diff --git a/...on/assembly/spades/rnaviral/quast/basic_stats/SAMPLE2_PE-scaffolds_coverage_histogram.pdf b/...on/assembly/spades/rnaviral/quast/basic_stats/SAMPLE2_PE-scaffolds_coverage_histogram.pdf
diff --git a/...recon/assembly/spades/rnaviral/quast/basic_stats/SAMPLE2_PE.scaffolds_GC_content_plot.pdf b/...recon/assembly/spades/rnaviral/quast/basic_stats/SAMPLE2_PE.scaffolds_GC_content_plot.pdf
diff --git a/...on/assembly/spades/rnaviral/quast/basic_stats/SAMPLE3_SE-scaffolds_coverage_histogram.pdf b/...on/assembly/spades/rnaviral/quast/basic_stats/SAMPLE3_SE-scaffolds_coverage_histogram.pdf
diff --git a/...recon/assembly/spades/rnaviral/quast/basic_stats/SAMPLE3_SE.scaffolds_GC_content_plot.pdf b/...recon/assembly/spades/rnaviral/quast/basic_stats/SAMPLE3_SE.scaffolds_GC_content_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/coverage_histogram.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/coverage_histogram.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/cumulative_plot.pdf b/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/cumulative_plot.pdf
diff --git a/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/gc.icarus.txt b/public/examples/viralrecon/assembly/spades/rnaviral/quast/basic_stats/gc.icarus.txt
diff --git a/...lrecon/assembly/spades/rnaviral/quast/contigs_reports/SAMPLE1_PE-scaffolds.mis_contigs.fa b/...lrecon/assembly/spades/rnaviral/quast/contigs_reports/SAMPLE1_PE-scaffolds.mis_contigs.fa
diff --git a/...lrecon/assembly/spades/rnaviral/quast/contigs_reports/SAMPLE2_PE-scaffolds.mis_contigs.fa b/...lrecon/assembly/spades/rnaviral/quast/contigs_reports/SAMPLE2_PE-scaffolds.mis_contigs.fa
diff --git a/...lrecon/assembly/spades/rnaviral/quast/contigs_reports/SAMPLE3_SE-scaffolds.mis_contigs.fa b/...lrecon/assembly/spades/rnaviral/quast/contigs_reports/SAMPLE3_SE-scaffolds.mis_contigs.fa
diff --git a/...on/assembly/spades/rnaviral/quast/contigs_reports/all_alignments_SAMPLE1_PE-scaffolds.tsv b/...on/assembly/spades/rnaviral/quast/contigs_reports/all_alignments_SAMPLE1_PE-scaffolds.tsv
diff --git a/...on/assembly/spades/rnaviral/quast/contigs_reports/all_alignments_SAMPLE2_PE-scaffolds.tsv b/...on/assembly/spades/rnaviral/quast/contigs_reports/all_alignments_SAMPLE2_PE-scaffolds.tsv
diff --git a/...on/assembly/spades/rnaviral/quast/contigs_reports/all_alignments_SAMPLE3_SE-scaffolds.tsv b/...on/assembly/spades/rnaviral/quast/contigs_reports/all_alignments_SAMPLE3_SE-scaffolds.tsv
diff --git a/...pades/rnaviral/quast/contigs_reports/contigs_report_SAMPLE1_PE-scaffolds.mis_contigs.info b/...pades/rnaviral/quast/contigs_reports/contigs_report_SAMPLE1_PE-scaffolds.mis_contigs.info
diff --git a/...assembly/spades/rnaviral/quast/contigs_reports/contigs_report_SAMPLE1_PE-scaffolds.stderr b/...assembly/spades/rnaviral/quast/contigs_reports/contigs_report_SAMPLE1_PE-scaffolds.stderr