Update README.md

README.md

@@ -54,3 +54,21 @@ Create the Python environment
 
    pyenv-virtualenv 2.7.10 CHi-C
    pip install --editable .
+
+Tests
+-----
+
+Tests must be runned from the top directory.
+Test for single tools are runned with pytest, example: $pytest tests/test_rmap_tool.py
+There is an order to run single tests:
+  - test_rmap_tool.py
+  - test_baitmap.py
+  - test_design.py
+  - test_hicup.py
+  - test_bam2chicago.py
+  - test_pyCHiC.py
+
+To run all test type: $python tests/test_toolchains.py
+
+IMPORTANT! From the top directory type ./tidy_data before running tests/test_toolchains.py
+