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Update howto_config.rst
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athina1 committed Aug 29, 2018
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Expand Up @@ -19,7 +19,7 @@ HOWTO - Configuration Files
Tool Description
----------------

This configuration file is used to describe the Tool and inform the VRE about what aruments are requiredby the tool and a list of the file types that can be used as inputs and the matching names that should be used as input paramaeters.
This configuration file is used to describe the Tool and inform the VRE about what arguments are required by the tool and a list of the file types that can be used as inputs and the matching names that should be used as input parameters.

Below is the example Tool config file for the process_test workflow. It is located in the tool_config directory within the repository. For a full description of all of the parameters please consult the `Tool Integration Document <https://docs.google.com/document/d/1Fid4RkNyt9-_0g_SrCw8J1k8MrOMZI4GLzzpdCAATZc/edit?usp=sharing>`_.

Expand Down Expand Up @@ -249,4 +249,4 @@ Lists the file location that are used as input. The configuration names should m
Examples
^^^^^^^^

For larger examples of JSON configuration files that can be used to test pipelines have a look at the `mg-process-fastq test configuration files <https://github.com/Multiscale-Genomics/mg-process-fastq/tree/master/tests/json>`_ on GitHub.
For larger examples of JSON configuration files that can be used to test pipelines have a look at the `mg-process-fastq test configuration files <https://github.com/Multiscale-Genomics/mg-process-fastq/tree/master/tests/json>`_ on GitHub.

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