UBO-264 FSU040THUL-401 Added css class to badges indicating the class…

pom.xml

@@ -55,6 +55,7 @@
     <jquery.version>3.5.1</jquery.version>
     <mycore.version>2022.06.3-SNAPSHOT</mycore.version>
     <node.version>v16.0.0</node.version>
+    <pica2mods.version>2.8-SNAPSHOT</pica2mods.version>
     <sortpom.sortDeps>scope,groupId,artifactId</sortpom.sortDeps>
     <sortpom.sortFile>https://gist.githubusercontent.com/yagee-de/dfd3698c1b49173dbf251f74eb6a9297/raw/406460c088ff3cb6354e4ae6b40535e6f841607d/mycore_sort.xml</sortpom.sortFile>
     <sortpom.sortProps>true</sortpom.sortProps>
@@ -300,6 +301,11 @@
         <artifactId>commons-text</artifactId>
         <version>1.10.0</version>
       </dependency>
+      <dependency>
+        <groupId>org.mycore</groupId>
+        <artifactId>mycore-orcid2</artifactId>
+        <version>${mycore.version}</version>
+      </dependency>
       <dependency>
         <groupId>org.mycore.ubo</groupId>
         <artifactId>ubo-cli</artifactId>

ubo-common/pom.xml

@@ -233,7 +233,7 @@
     </dependency>
     <dependency>
       <groupId>org.mycore</groupId>
-      <artifactId>mycore-orcid</artifactId>
+      <artifactId>mycore-orcid2</artifactId>
     </dependency>
     <dependency>
       <groupId>org.mycore</groupId>
@@ -344,7 +344,7 @@
     <dependency>
       <groupId>org.mycore.pica2mods</groupId>
       <artifactId>pica2mods-xslt</artifactId>
-      <version>2.7-SNAPSHOT</version>
+      <version>${pica2mods.version}</version>
       <scope>runtime</scope>
     </dependency>
     <dependency>

ubo-common/src/main/java/org/mycore/ubo/importer/orcid/Orcid2WorksTransformer.java

@@ -1,30 +1,56 @@
 package org.mycore.ubo.importer.orcid;
 
 import java.io.IOException;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
 
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
 import org.jdom2.Element;
-import org.jdom2.JDOMException;
 import org.mycore.common.content.MCRContent;
 import org.mycore.common.content.MCRJDOMContent;
 import org.mycore.common.content.transformer.MCRContentTransformer;
-import org.mycore.orcid.MCRORCIDProfile;
-import org.mycore.orcid.works.MCRWorksSection;
-import org.xml.sax.SAXException;
+import org.mycore.orcid2.MCRORCIDUtils;
+import org.mycore.orcid2.client.exception.MCRORCIDRequestException;
+import org.mycore.orcid2.v3.client.MCRORCIDClientHelper;
+import org.mycore.orcid2.v3.client.MCRORCIDSectionImpl;
+import org.mycore.orcid2.v3.work.MCRORCIDWorkUtils;
+import org.orcid.jaxb.model.v3.release.record.Work;
+import org.orcid.jaxb.model.v3.release.record.summary.WorkGroup;
+import org.orcid.jaxb.model.v3.release.record.summary.WorkSummary;
+import org.orcid.jaxb.model.v3.release.record.summary.Works;
 
 public class Orcid2WorksTransformer extends MCRContentTransformer {
 
+    protected Logger LOGGER = LogManager.getLogger(Orcid2WorksTransformer.class);
+
     public MCRJDOMContent transform(MCRContent source) throws IOException {
-        String orcid = source.asString();
-
-        MCRORCIDProfile profile = new MCRORCIDProfile(orcid);
-        try {
-            MCRWorksSection worksSection = profile.getWorksSection();
-            worksSection.fetchDetails();
-
-            Element modsCollection = worksSection.buildMODSCollection();
-            return new MCRJDOMContent(modsCollection);
-        } catch (JDOMException | SAXException ex) {
-            throw new IOException(ex);
-        }
+        List<Work> workList = new ArrayList<>();
+
+        Arrays.stream(source.asString().split("\\s"))
+            .filter(orcid -> orcid.trim().length() > 0)
+            .forEach(orcid -> {
+                try {
+                    Works works = MCRORCIDClientHelper.getClientFactory().createReadClient().fetch(orcid,
+                        MCRORCIDSectionImpl.WORKS, Works.class);
+
+                    for (WorkGroup wg : works.getWorkGroup()) {
+                        WorkSummary ws = wg.getWorkSummary().stream()
+                            .filter(workSummary -> workSummary.getDisplayIndex().equals("1")).findFirst().get();
+
+                        Work work = MCRORCIDClientHelper.getClientFactory().createReadClient().fetch(orcid,
+                            MCRORCIDSectionImpl.WORK, Work.class, ws.getPutCode());
+                        workList.add(work);
+                    }
+                } catch (MCRORCIDRequestException e) {
+                    LOGGER.warn("Could not get works for ORCID {}. {}", orcid, e.getMessage());
+                }
+            });
+
+        List<Element> workElements = MCRORCIDWorkUtils.buildUnmergedMODSFromWorks(workList);
+        Element modsCollection = MCRORCIDUtils.buildMODSCollection(workElements);
+
+        return new MCRJDOMContent(modsCollection);
     }
 }

ubo-common/src/main/java/org/mycore/ubo/matcher/MCRUserMatcherUtils.java

@@ -21,7 +21,7 @@
 import org.mycore.common.config.MCRConfiguration2;
 import org.mycore.datamodel.metadata.MCRObject;
 import org.mycore.mods.MCRMODSWrapper;
-import org.mycore.orcid.user.MCRORCIDUser;
+import org.mycore.orcid2.user.MCRORCIDUser;
 import org.mycore.ubo.ldap.LDAPObject;
 import org.mycore.user2.MCRRealmFactory;
 import org.mycore.user2.MCRUser;

ubo-common/src/main/java/org/mycore/ubo/orcid/DozBibORCIDUserServlet.java

@@ -0,0 +1,88 @@
+package org.mycore.ubo.orcid;
+
+import java.io.IOException;
+import java.util.Set;
+import java.util.SortedSet;
+
+import jakarta.servlet.http.HttpServletResponse;
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
+import org.mycore.common.MCRSessionMgr;
+import org.mycore.common.xml.MCRXMLFunctions;
+import org.mycore.frontend.MCRFrontendUtil;
+import org.mycore.frontend.servlets.MCRServlet;
+import org.mycore.frontend.servlets.MCRServletJob;
+import org.mycore.orcid2.user.MCRORCIDSessionUtils;
+import org.mycore.orcid2.user.MCRORCIDUser;
+import org.mycore.orcid2.user.MCRORCIDUserUtils;
+import org.mycore.user2.MCRUser;
+import org.mycore.user2.MCRUserAttribute;
+import org.mycore.user2.MCRUserManager;
+
+/**
+ * Servlet removes all orcid access tokens of the current user. If you want to remove a single access token for
+ * a given orcid please see {@link org.mycore.orcid2.rest.resources.MCRORCIDResource#revoke(String)} )}
+ *
+ * @author shermann
+ * */
+public class DozBibORCIDUserServlet extends MCRServlet {
+
+    public final static Logger LOGGER = LogManager.getLogger(DozBibORCIDUserServlet.class);
+
+    @Override
+    protected void doGetPost(MCRServletJob job) throws Exception {
+        if (MCRXMLFunctions.isCurrentUserGuestUser()) {
+            job.getResponse().sendError(HttpServletResponse.SC_FORBIDDEN);
+        }
+
+        String action = job.getRequest().getParameter("action");
+        if (action == null) {
+            redirectToProfile(job);
+            return;
+        }
+
+        MCRORCIDUser orcidUser = MCRORCIDSessionUtils.getCurrentUser();
+        Set<String> orcidIdentifiers = orcidUser.getORCIDs();
+
+        if (orcidIdentifiers.isEmpty()) {
+            redirectToProfile(job);
+            return;
+        }
+
+        switch (action) {
+            case "sync":
+                toggleSync();
+                break;
+            case "revoke":
+                orcidUser.getUser()
+                    .getAttributes()
+                    .removeIf(a -> a.getName().equals("orcid_update_profile"));
+
+                orcidIdentifiers.forEach(orcid -> {
+                    LOGGER.info("Unlinking ORCID {} for user {}", orcid, orcidUser.getUser().getUserID());
+                    MCRORCIDUserUtils.revokeCredentialByORCID(orcidUser, orcid);
+                });
+                break;
+        }
+
+        redirectToProfile(job);
+    }
+
+    private void toggleSync() {
+        MCRUser user = MCRUserManager.getUser(MCRSessionMgr.getCurrentSession().getUserInformation().getUserID());
+        SortedSet<MCRUserAttribute> attributes = user.getAttributes();
+
+        attributes.stream()
+            .filter(attr -> attr.getName().equals("orcid_update_profile"))
+            .findFirst()
+            .ifPresentOrElse(present -> {
+                attributes.remove(present);
+            }, () -> {
+                attributes.add(new MCRUserAttribute("orcid_update_profile", String.valueOf(true)));
+            });
+    }
+
+    protected void redirectToProfile(MCRServletJob job) throws IOException {
+        job.getResponse().sendRedirect(MCRFrontendUtil.getBaseURL() + "servlets/MCRUserServlet?action=show");
+    }
+}

ubo-common/src/main/java/org/mycore/ubo/orcid/DozBibORCIDUtils.java

@@ -0,0 +1,95 @@
+package org.mycore.ubo.orcid;
+
+import java.util.Map;
+import java.util.Set;
+import java.util.concurrent.atomic.AtomicInteger;
+
+import org.apache.logging.log4j.LogManager;
+import org.apache.logging.log4j.Logger;
+import org.mycore.common.xml.MCRXMLFunctions;
+import org.mycore.orcid2.client.MCRORCIDCredential;
+import org.mycore.orcid2.client.MCRORCIDUserClient;
+import org.mycore.orcid2.client.exception.MCRORCIDRequestException;
+import org.mycore.orcid2.user.MCRORCIDSessionUtils;
+import org.mycore.orcid2.user.MCRORCIDUser;
+import org.mycore.orcid2.v3.client.MCRORCIDClientHelper;
+import org.mycore.orcid2.v3.client.MCRORCIDSectionImpl;
+import org.orcid.jaxb.model.v3.release.record.summary.Works;
+
+public class DozBibORCIDUtils {
+
+    protected static final Logger LOGGER = LogManager.getLogger(DozBibORCIDUtils.class);
+
+    /**
+     * Get the total number of publications for all orcids connected with UBO.
+     *
+     * @return the total number of publications
+     * */
+    public static int getNumWorks() {
+        MCRORCIDUser orcidUser = MCRORCIDSessionUtils.getCurrentUser();
+        Set<String> orcidIdentifiers = orcidUser.getORCIDs();
+
+        AtomicInteger numWorks = new AtomicInteger(0);
+
+        orcidIdentifiers.forEach(orcid -> {
+            MCRORCIDCredential credential = orcidUser.getCredentialByORCID(orcid);
+            if (credential != null) {
+                try {
+                    MCRORCIDUserClient client = MCRORCIDClientHelper.getClientFactory()
+                        .createUserClient(orcid, credential);
+                    Works works = client.fetch(MCRORCIDSectionImpl.WORKS, Works.class);
+                    numWorks.addAndGet(works.getWorkGroup().size());
+                } catch (MCRORCIDRequestException e) {
+                    LOGGER.error(e.getMessage(), e);
+                }
+            }
+        });
+
+        return numWorks.get();
+    }
+
+    /**
+     * Returns the number of publications for the given orcid. The orcid must be connected with UBO otherwise 0
+     * will be returned.
+     *
+     * @param orcid the orcid for which the number of publications will be retrieved
+     *
+     * @return the number of publications for the given orcid
+     * */
+    public static int getNumWorks(String orcid) {
+        MCRORCIDUser orcidUser = MCRORCIDSessionUtils.getCurrentUser();
+        MCRORCIDCredential credentialByORCID = orcidUser.getCredentialByORCID(orcid);
+
+        MCRORCIDUserClient client = MCRORCIDClientHelper.getClientFactory().createUserClient(orcid, credentialByORCID);
+        AtomicInteger numWorks = new AtomicInteger(0);
+
+        try {
+            Works works = client.fetch(MCRORCIDSectionImpl.WORKS, Works.class);
+            numWorks.addAndGet(works.getWorkGroup().size());
+        } catch (MCRORCIDRequestException e) {
+            LOGGER.error(e.getMessage(), e);
+        }
+
+        return numWorks.get();
+    }
+
+    public static String getFirstOrcidByCurrentUser() {
+        MCRORCIDUser orcidUser = MCRORCIDSessionUtils.getCurrentUser();
+        return orcidUser.getORCIDs().isEmpty() ? "" : orcidUser.getORCIDs().iterator().next();
+    }
+
+    public static boolean weAreTrustedParty() {
+        if (MCRXMLFunctions.isCurrentUserGuestUser()) {
+            return false;
+        }
+
+        MCRORCIDUser orcidUser = MCRORCIDSessionUtils.getCurrentUser();
+        Map<String, MCRORCIDCredential> credentials = orcidUser.getCredentials();
+
+        return !credentials.isEmpty();
+    }
+
+    public static boolean isConnected(String orcid) {
+        return MCRORCIDSessionUtils.getCurrentUser().getCredentialByORCID(orcid) != null;
+    }
+}