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SraRunTable (Humans).txt
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SraRunTable (Humans).txt
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Assay_Type AvgSpotLen BioProject BioSample BioSampleModel Center_Name Experiment Instrument LibraryLayout LibrarySelection Library_Name LoadDate MBases MBytes Platform RUN RUN_identifier ReleaseDate Run SRA_Sample SRA_Study Sample_Name Sex age biomaterial_provider cell_line cell_type disease genotype isolate sampling_age sex source_name tissue Consent DATASTORE_filetype DATASTORE_provider InsertSize LibrarySource Organism
RNA-Seq 100 PRJNA495860 SAMN10233384 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868962 NextSeq 500 SINGLE Inverse rRNA R154_F10 10/11/2018 1291 818 ILLUMINA R154 R154_F10 12/13/2018 SRR8038401 SRS3924980 SRP165240 E35_iso_CNS1 "Joel Gottesfeld, Scripps Research" E35 neuron Unaffected unaffected isogenic to 3816 female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233391 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868963 NextSeq 500 SINGLE Inverse rRNA ES8 10/11/2018 3687 1401 ILLUMINA NS211-212 ES8 12/13/2018 SRR8038400 SRS3924983 SRP165240 E35_iso_PNS5 "Joel Gottesfeld, Scripps Research" E35 sensory neuron Unaffected unaffected isogenic to 3816 female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233390 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868964 NextSeq 500 SINGLE Inverse rRNA ES7 10/11/2018 3296 1241 ILLUMINA NS211-212 ES7 12/13/2018 SRR8038399 SRS3924982 SRP165240 E35_iso_PNS4 "Joel Gottesfeld, Scripps Research" E35 sensory neuron Unaffected unaffected isogenic to 3816 female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233389 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868965 NextSeq 500 SINGLE Inverse rRNA ES3 10/11/2018 3302 1250 ILLUMINA NS211-212 ES3 12/13/2018 SRR8038398 SRS3924987 SRP165240 E35_iso_PNS3 "Joel Gottesfeld, Scripps Research" E35 sensory neuron Unaffected unaffected isogenic to 3816 female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233388 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868966 NextSeq 500 SINGLE Inverse rRNA ES2 10/11/2018 3376 1275 ILLUMINA NS211-212 ES2 12/13/2018 SRR8038397 SRS3924984 SRP165240 E35_iso_PNS2 "Joel Gottesfeld, Scripps Research" E35 sensory neuron Unaffected unaffected isogenic to 3816 female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233378 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868967 NextSeq 500 SINGLE Inverse rRNA R154_F1 10/11/2018 1153 732 ILLUMINA R154 R154_F1 12/13/2018 SRR8038396 SRS3924985 SRP165240 3816_iso_CNS1 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233379 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868968 NextSeq 500 SINGLE Inverse rRNA R154_F2 10/11/2018 1227 779 ILLUMINA R154 R154_F2 12/13/2018 SRR8038395 SRS3924981 SRP165240 3816_iso_CNS2 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233380 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868969 NextSeq 500 SINGLE Inverse rRNA R154_F3 10/11/2018 1081 692 ILLUMINA R154 R154_F3 12/13/2018 SRR8038394 SRS3924986 SRP165240 3816_iso_CNS3 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233381 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868970 NextSeq 500 SINGLE Inverse rRNA R154_F4 10/11/2018 1108 702 ILLUMINA R154 R154_F4 12/13/2018 SRR8038393 SRS3924988 SRP165240 FA1_iso_CNS1 "Joel Gottesfeld, Scripps Research" FA1 neuron Friedreich's ataxia carrier FRDA carrier isogenic to 3816 female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233374 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868971 NextSeq 500 SINGLE Inverse rRNA 8333_DMSO_27 10/11/2018 1850 664 ILLUMINA NS80-81 8333_DMSO_27 12/13/2018 SRR8038392 SRS3924989 SRP165240 8333_DMSO_27 "Joel Gottesfeld, Scripps Research" 8333 neuron Unaffected unaffected male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233375 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868972 NextSeq 500 SINGLE Inverse rRNA 8333_109_29 10/11/2018 2177 784 ILLUMINA NS80-81 8333_109_29 12/13/2018 SRR8038391 SRS3924990 SRP165240 8333_109_29 "Joel Gottesfeld, Scripps Research" 8333 neuron Unaffected unaffected male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233376 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868973 NextSeq 500 SINGLE Inverse rRNA 8333_109_30 10/11/2018 1813 658 ILLUMINA NS80-81 8333_109_30 12/13/2018 SRR8038390 SRS3924991 SRP165240 8333_109_30 "Joel Gottesfeld, Scripps Research" 8333 neuron Unaffected unaffected male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233377 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868974 NextSeq 500 SINGLE Inverse rRNA 8333_109_32 10/11/2018 1695 610 ILLUMINA NS80-81 8333_109_32 12/13/2018 SRR8038389 SRS3924992 SRP165240 8333_109_32 "Joel Gottesfeld, Scripps Research" 8333 neuron Unaffected unaffected male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233382 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868975 NextSeq 500 SINGLE Inverse rRNA R154_F5 10/11/2018 1263 801 ILLUMINA R154 R154_F5 12/13/2018 SRR8038388 SRS3924993 SRP165240 FA1_iso_CNS2 "Joel Gottesfeld, Scripps Research" FA1 neuron Friedreich's ataxia carrier FRDA carrier isogenic to 3816 female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233383 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868976 NextSeq 500 SINGLE Inverse rRNA R154_F6 10/11/2018 1313 838 ILLUMINA R154 R154_F6 12/13/2018 SRR8038387 SRS3924994 SRP165240 FA1_iso_CNS3 "Joel Gottesfeld, Scripps Research" FA1 neuron Friedreich's ataxia carrier FRDA carrier isogenic to 3816 female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233396 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868977 NextSeq 500 SINGLE Inverse rRNA ES13 10/11/2018 3092 1167 ILLUMINA NS211-212 ES13 12/13/2018 SRR8038386 SRS3924995 SRP165240 E35_iso_iPSC1 "Joel Gottesfeld, Scripps Research" E35 iPSC Unaffected unaffected isogenic to 3816 female iPSCs public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233397 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868978 NextSeq 500 SINGLE Inverse rRNA ES14 10/11/2018 3354 1266 ILLUMINA NS211-212 ES14 12/13/2018 SRR8038385 SRS3924996 SRP165240 E35_iso_iPSC2 "Joel Gottesfeld, Scripps Research" E35 iPSC Unaffected unaffected isogenic to 3816 female iPSCs public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233394 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868979 NextSeq 500 SINGLE Inverse rRNA ES11 10/11/2018 3279 1252 ILLUMINA NS211-212 ES11 12/13/2018 SRR8038384 SRS3924997 SRP165240 3816_iso_PNS5 "Joel Gottesfeld, Scripps Research" 3816 sensory neuron Friedreich's ataxia FRDA patient female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233398 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868980 NextSeq 500 SINGLE Inverse rRNA ES15 10/11/2018 3549 1343 ILLUMINA NS211-212 ES15 12/13/2018 SRR8038383 SRS3924998 SRP165240 E35_iso_iPSC3 "Joel Gottesfeld, Scripps Research" E35 iPSC Unaffected unaffected isogenic to 3816 female iPSCs public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233385 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868981 NextSeq 500 SINGLE Inverse rRNA R154_F11 10/11/2018 1250 797 ILLUMINA R154 R154_F11 12/13/2018 SRR8038382 SRS3924999 SRP165240 E35_iso_CNS2 "Joel Gottesfeld, Scripps Research" E35 neuron Unaffected unaffected isogenic to 3816 female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233395 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868982 NextSeq 500 SINGLE Inverse rRNA ES12 10/11/2018 3162 1192 ILLUMINA NS211-212 ES12 12/13/2018 SRR8038381 SRS3925000 SRP165240 3816_iso_PNS6 "Joel Gottesfeld, Scripps Research" 3816 sensory neuron Friedreich's ataxia FRDA patient female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233400 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868983 NextSeq 500 SINGLE Inverse rRNA ES17 10/11/2018 3713 1407 ILLUMINA NS211-212 ES17 12/13/2018 SRR8038380 SRS3925001 SRP165240 3816_iso_iPSC2 "Joel Gottesfeld, Scripps Research" 3816 iPSC Friedreich's ataxia FRDA patient female iPSCs public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233401 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868984 NextSeq 500 SINGLE Inverse rRNA ES18 10/11/2018 3814 1440 ILLUMINA NS211-212 ES18 12/13/2018 SRR8038379 SRS3925002 SRP165240 3816_iso_iPSC3 "Joel Gottesfeld, Scripps Research" 3816 iPSC Friedreich's ataxia FRDA patient female iPSCs public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233393 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868985 NextSeq 500 SINGLE Inverse rRNA ES10 10/11/2018 3630 1377 ILLUMINA NS211-212 ES10 12/13/2018 SRR8038378 SRS3925004 SRP165240 3816_iso_PNS4 "Joel Gottesfeld, Scripps Research" 3816 sensory neuron Friedreich's ataxia FRDA patient female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233392 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868986 NextSeq 500 SINGLE Inverse rRNA ES9 10/11/2018 3622 1374 ILLUMINA NS211-212 ES9 12/13/2018 SRR8038377 SRS3925003 SRP165240 E35_iso_PNS6 "Joel Gottesfeld, Scripps Research" E35 sensory neuron Unaffected unaffected isogenic to 3816 female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233373 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868987 NextSeq 500 SINGLE Inverse rRNA 8333_DMSO_26 10/11/2018 1679 608 ILLUMINA NS80-81 8333_DMSO_26 12/13/2018 SRR8038376 SRS3925005 SRP165240 8333_DMSO_26 "Joel Gottesfeld, Scripps Research" 8333 neuron Unaffected unaffected male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 202 PRJNA305532 SAMN04327643 GEO SRX1472989 Illumina HiSeq 2500 PAIRED cDNA 12/9/2015 7010 2887 ILLUMINA 10/11/2017 SRR2984009 SRS1198920 SRP067184 GSM1968916 induced pluripotent stem cell induced pluripotent stem cell public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 202 PRJNA305532 SAMN04327644 GEO SRX1472990 Illumina HiSeq 2500 PAIRED cDNA 12/9/2015 7396 3001 ILLUMINA 10/11/2017 SRR2984010 SRS1198921 SRP067184 GSM1968917 induced pluripotent stem cell induced pluripotent stem cell public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 202 PRJNA305532 SAMN04327645 GEO SRX1472991 Illumina HiSeq 2500 PAIRED cDNA 12/9/2015 13458 5559 ILLUMINA 10/11/2017 SRR2984011 SRS1198919 SRP067184 GSM1968918 induced pluripotent stem cell induced pluripotent stem cell public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 202 PRJNA305532 SAMN04327646 GEO SRX1472992 Illumina HiSeq 2500 PAIRED cDNA 12/9/2015 5469 2209 ILLUMINA 10/11/2017 SRR2984012 SRS1198918 SRP067184 GSM1968919 neural progenitor neural progenitor public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233372 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868988 NextSeq 500 SINGLE Inverse rRNA 8333_DMSO_25 10/11/2018 2018 721 ILLUMINA NS80-81 8333_DMSO_25 12/13/2018 SRR8038375 SRS3925007 SRP165240 8333_DMSO_25 "Joel Gottesfeld, Scripps Research" 8333 neuron Unaffected unaffected male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233399 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868989 NextSeq 500 SINGLE Inverse rRNA ES16 10/11/2018 3421 1294 ILLUMINA NS211-212 ES16 12/13/2018 SRR8038374 SRS3925006 SRP165240 3816_iso_iPSC1 "Joel Gottesfeld, Scripps Research" 3816 iPSC Friedreich's ataxia FRDA patient female iPSCs public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233369 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868990 NextSeq 500 SINGLE Inverse rRNA Kips_109_21 10/11/2018 1814 652 ILLUMINA NS80-81 Kips_109_21 12/13/2018 SRR8038373 SRS3925008 SRP165240 Kips_109_21 "Joel Gottesfeld, Scripps Research" Kips neuron Unaffected unaffected female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233368 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868991 NextSeq 500 SINGLE Inverse rRNA Kips_DMSO_19 10/11/2018 1910 687 ILLUMINA NS80-81 Kips_DMSO_19 12/13/2018 SRR8038372 SRS3925009 SRP165240 Kips_DMSO_19 "Joel Gottesfeld, Scripps Research" Kips neuron Unaffected unaffected female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233371 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868992 NextSeq 500 SINGLE Inverse rRNA Kips_109_23 10/11/2018 1649 593 ILLUMINA NS80-81 Kips_109_23 12/13/2018 SRR8038371 SRS3925010 SRP165240 Kips_109_23 "Joel Gottesfeld, Scripps Research" Kips neuron Unaffected unaffected female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233370 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868993 NextSeq 500 SINGLE Inverse rRNA Kips_109_22 10/11/2018 1822 658 ILLUMINA NS80-81 Kips_109_22 12/13/2018 SRR8038370 SRS3925012 SRP165240 Kips_109_22 "Joel Gottesfeld, Scripps Research" Kips neuron Unaffected unaffected female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233365 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868994 NextSeq 500 SINGLE Inverse rRNA 3816_109_16 10/11/2018 993 371 ILLUMINA NS80-81 3816_109_16 12/13/2018 SRR8038369 SRS3925011 SRP165240 3816_109_16 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233364 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868995 NextSeq 500 SINGLE Inverse rRNA 3816_109_15 10/11/2018 952 360 ILLUMINA NS80-81 3816_109_15 12/13/2018 SRR8038368 SRS3925013 SRP165240 3816_109_15 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233367 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868996 NextSeq 500 SINGLE Inverse rRNA Kips_DMSO_18 10/11/2018 1888 676 ILLUMINA NS80-81 Kips_DMSO_18 12/13/2018 SRR8038367 SRS3925014 SRP165240 Kips_DMSO_18 "Joel Gottesfeld, Scripps Research" Kips neuron Unaffected unaffected female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233366 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868997 NextSeq 500 SINGLE Inverse rRNA Kips_DMSO_17 10/11/2018 1951 693 ILLUMINA NS80-81 Kips_DMSO_17 12/13/2018 SRR8038366 SRS3925015 SRP165240 Kips_DMSO_17 "Joel Gottesfeld, Scripps Research" Kips neuron Unaffected unaffected female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233387 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868998 NextSeq 500 SINGLE Inverse rRNA ES1 10/11/2018 3341 1259 ILLUMINA NS211-212 ES1 12/13/2018 SRR8038365 SRS3925016 SRP165240 E35_iso_PNS1 "Joel Gottesfeld, Scripps Research" E35 sensory neuron Unaffected unaffected isogenic to 3816 female PNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233363 Human THE SCRIPPS RESEARCH INSTITUTE SRX4868999 NextSeq 500 SINGLE Inverse rRNA 3816_109_13 10/11/2018 1064 399 ILLUMINA NS80-81 3816_109_13 12/13/2018 SRR8038364 SRS3925017 SRP165240 3816_109_13 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233362 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869000 NextSeq 500 SINGLE Inverse rRNA 3816_DMSO_11 10/11/2018 1164 436 ILLUMINA NS80-81 3816_DMSO_11 12/13/2018 SRR8038363 SRS3925018 SRP165240 3816_DMSO_11 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA495860 SAMN10233386 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869001 NextSeq 500 SINGLE Inverse rRNA R154_F12 10/11/2018 1306 828 ILLUMINA R154 R154_F12 12/13/2018 SRR8038362 SRS3925019 SRP165240 E35_iso_CNS3 "Joel Gottesfeld, Scripps Research" E35 neuron Unaffected unaffected isogenic to 3816 female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233359 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869002 NextSeq 500 SINGLE Inverse rRNA 4078_109_8 10/11/2018 946 352 ILLUMINA NS80-81 4078_109_8 12/13/2018 SRR8038361 SRS3925033 SRP165240 4078_109_8 "Joel Gottesfeld, Scripps Research" 4078 neuron Friedreich's ataxia FRDA patient male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233358 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869003 NextSeq 500 SINGLE Inverse rRNA 4078_109_6 10/11/2018 961 359 ILLUMINA NS80-81 4078_109_6 12/13/2018 SRR8038360 SRS3925020 SRP165240 4078_109_6 "Joel Gottesfeld, Scripps Research" 4078 neuron Friedreich's ataxia FRDA patient male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233361 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869004 NextSeq 500 SINGLE Inverse rRNA 3816_DMSO_10 10/11/2018 9662 3634 ILLUMINA NS80-81 3816_DMSO_10 12/13/2018 SRR8038359 SRS3925023 SRP165240 3816_DMSO_10 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233360 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869005 NextSeq 500 SINGLE Inverse rRNA 3816_DMSO_9 10/11/2018 1028 382 ILLUMINA NS80-81 3816_DMSO_9 12/13/2018 SRR8038358 SRS3925021 SRP165240 3816_DMSO_9 "Joel Gottesfeld, Scripps Research" 3816 neuron Friedreich's ataxia FRDA patient female CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233355 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869006 NextSeq 500 SINGLE Inverse rRNA 4078_DMSO_3 10/11/2018 945 353 ILLUMINA NS80-81 4078_DMSO_3 12/13/2018 SRR8038357 SRS3925022 SRP165240 4078_DMSO_3 "Joel Gottesfeld, Scripps Research" 4078 neuron Friedreich's ataxia FRDA patient male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233354 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869007 NextSeq 500 SINGLE Inverse rRNA 4078_DMSO_2 10/11/2018 948 353 ILLUMINA NS80-81 4078_DMSO_2 12/13/2018 SRR8038356 SRS3925027 SRP165240 4078_DMSO_2 "Joel Gottesfeld, Scripps Research" 4078 neuron Friedreich's ataxia FRDA patient male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233357 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869008 NextSeq 500 SINGLE Inverse rRNA 4078_109_5 10/11/2018 1001 374 ILLUMINA NS80-81 4078_109_5 12/13/2018 SRR8038355 SRS3925024 SRP165240 4078_109_5 "Joel Gottesfeld, Scripps Research" 4078 neuron Friedreich's ataxia FRDA patient male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 75 PRJNA495860 SAMN10233356 Human THE SCRIPPS RESEARCH INSTITUTE SRX4869009 NextSeq 500 SINGLE Inverse rRNA 4078_DMSO_4 10/11/2018 1002 375 ILLUMINA NS80-81 4078_DMSO_4 12/13/2018 SRR8038354 SRS3925026 SRP165240 4078_DMSO_4 "Joel Gottesfeld, Scripps Research" 4078 neuron Friedreich's ataxia FRDA patient male CNS public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 202 PRJNA305532 SAMN04327647 GEO SRX1472993 Illumina HiSeq 2500 PAIRED cDNA 12/9/2015 5228 2109 ILLUMINA 10/11/2017 SRR2984013 SRS1198917 SRP067184 GSM1968920 neural progenitor neural progenitor public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 202 PRJNA305532 SAMN04327648 GEO SRX1472994 Illumina HiSeq 2500 PAIRED cDNA 12/9/2015 8208 3324 ILLUMINA 10/11/2017 SRR2984014 SRS1198916 SRP067184 GSM1968921 neural progenitor neural progenitor public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074281 GEO SRX2382335 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 3324 1183 ILLUMINA 12/2/2016 SRR5061836 SRS1824633 SRP094079 GSM2410323 SK-N-SH (ATCC HTB-11) "SK-N-SH, control" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074280 GEO SRX2382336 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 4206 1486 ILLUMINA 12/2/2016 SRR5061837 SRS1824632 SRP094079 GSM2410324 SK-N-SH (ATCC HTB-11) "SK-N-SH, control" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074279 GEO SRX2382337 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 4249 1500 ILLUMINA 12/2/2016 SRR5061838 SRS1824634 SRP094079 GSM2410325 SK-N-SH (ATCC HTB-11) "SK-N-SH, control" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074278 GEO SRX2382338 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 3917 1389 ILLUMINA 12/2/2016 SRR5061839 SRS1824635 SRP094079 GSM2410326 SK-N-SH (ATCC HTB-11) "SK-N-SH, WT EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074277 GEO SRX2382339 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 4744 1679 ILLUMINA 12/2/2016 SRR5061840 SRS1824636 SRP094079 GSM2410327 SK-N-SH (ATCC HTB-11) "SK-N-SH, WT EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074276 GEO SRX2382340 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 3604 1273 ILLUMINA 12/2/2016 SRR5061841 SRS1824637 SRP094079 GSM2410328 SK-N-SH (ATCC HTB-11) "SK-N-SH, WT EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074275 GEO SRX2382341 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 4228 1496 ILLUMINA 12/2/2016 SRR5061842 SRS1824639 SRP094079 GSM2410329 SK-N-SH (ATCC HTB-11) "SK-N-SH, p.P177L EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074274 GEO SRX2382342 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 4154 1465 ILLUMINA 12/2/2016 SRR5061843 SRS1824638 SRP094079 GSM2410330 SK-N-SH (ATCC HTB-11) "SK-N-SH, p.P177L EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074273 GEO SRX2382343 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 4700 1672 ILLUMINA 12/2/2016 SRR5061844 SRS1824640 SRP094079 GSM2410331 SK-N-SH (ATCC HTB-11) "SK-N-SH, p.P177L EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 100 PRJNA355321 SAMN06074272 GEO SRX2382344 Illumina HiSeq 2500 PAIRED cDNA 11/29/2016 3563 1253 ILLUMINA 12/2/2016 SRR5061845 SRS1824641 SRP094079 GSM2410332 SK-N-SH (ATCC HTB-11) "SK-N-SH, p.P177L EBF3" public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703205 GEO SRX3217714 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4365 2948 ILLUMINA 10/11/2017 SRR6078274 SRS2542622 SRP118922 GSM2794401 Control 37 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703204 GEO SRX3217715 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5062 3397 ILLUMINA 10/11/2017 SRR6078275 SRS2542623 SRP118922 GSM2794402 Control 11 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703203 GEO SRX3217716 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4423 2989 ILLUMINA 10/11/2017 SRR6078276 SRS2542624 SRP118922 GSM2794403 Control 40 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703202 GEO SRX3217717 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4883 3298 ILLUMINA 10/11/2017 SRR6078277 SRS2542625 SRP118922 GSM2794404 Control 52 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703200 GEO SRX3217718 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5217 3531 ILLUMINA 10/11/2017 SRR6078278 SRS2542626 SRP118922 GSM2794405 Control 1 d fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703199 GEO SRX3217719 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4091 2752 ILLUMINA 10/11/2017 SRR6078279 SRS2542627 SRP118922 GSM2794406 Control 47 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703198 GEO SRX3217720 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5664 3817 ILLUMINA 10/11/2017 SRR6078280 SRS2542628 SRP118922 GSM2794407 Control 64 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703206 GEO SRX3217721 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4471 3022 ILLUMINA 10/11/2017 SRR6078281 SRS2542629 SRP118922 GSM2794408 Control 10 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703208 GEO SRX3217722 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5421 3671 ILLUMINA 10/11/2017 SRR6078282 SRS2542658 SRP118922 GSM2794409 Control 24 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703201 GEO SRX3217723 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4367 2947 ILLUMINA 10/11/2017 SRR6078283 SRS2542630 SRP118922 GSM2794410 Control 27 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703207 GEO SRX3217724 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5454 3687 ILLUMINA 10/11/2017 SRR6078284 SRS2542631 SRP118922 GSM2794411 Control 48 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703196 GEO SRX3217725 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4936 3352 ILLUMINA 10/11/2017 SRR6078285 SRS2542632 SRP118922 GSM2794412 Control 17 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703174 GEO SRX3217726 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5155 3485 ILLUMINA 10/11/2017 SRR6078286 SRS2542633 SRP118922 GSM2794413 Control 19 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703197 GEO SRX3217727 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5002 3351 ILLUMINA 10/11/2017 SRR6078287 SRS2542634 SRP118922 GSM2794414 Control 22 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703195 GEO SRX3217728 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4683 3176 ILLUMINA 10/11/2017 SRR6078288 SRS2542635 SRP118922 GSM2794415 Control 19 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703194 GEO SRX3217729 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4446 2999 ILLUMINA 10/11/2017 SRR6078289 SRS2542636 SRP118922 GSM2794416 Control 35 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703193 GEO SRX3217730 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4797 3266 ILLUMINA 10/11/2017 SRR6078290 SRS2542637 SRP118922 GSM2794417 Control 39 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703192 GEO SRX3217731 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4733 3173 ILLUMINA 10/11/2017 SRR6078291 SRS2542638 SRP118922 GSM2794418 Friedreich''s ataxia 56 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703191 GEO SRX3217732 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5030 3387 ILLUMINA 10/11/2017 SRR6078292 SRS2542639 SRP118922 GSM2794419 Friedreich''s ataxia 41 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703190 GEO SRX3217733 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5314 3545 ILLUMINA 10/11/2017 SRR6078293 SRS2542640 SRP118922 GSM2794420 Friedreich''s ataxia 47 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703189 GEO SRX3217734 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 3957 2662 ILLUMINA 10/11/2017 SRR6078294 SRS2542641 SRP118922 GSM2794421 Friedreich''s ataxia 31 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703188 GEO SRX3217735 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4568 3073 ILLUMINA 10/11/2017 SRR6078295 SRS2542642 SRP118922 GSM2794422 Friedreich''s ataxia 19 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703187 GEO SRX3217736 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5366 3608 ILLUMINA 10/11/2017 SRR6078296 SRS2542643 SRP118922 GSM2794423 Friedreich''s ataxia 13 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703186 GEO SRX3217737 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4376 2944 ILLUMINA 10/11/2017 SRR6078297 SRS2542644 SRP118922 GSM2794424 Friedreich''s ataxia 30 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703185 GEO SRX3217738 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5232 3508 ILLUMINA 10/11/2017 SRR6078298 SRS2542645 SRP118922 GSM2794425 Friedreich''s ataxia 33 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703184 GEO SRX3217739 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4896 3295 ILLUMINA 10/11/2017 SRR6078299 SRS2542646 SRP118922 GSM2794426 Friedreich''s ataxia 28 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703183 GEO SRX3217740 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4782 3211 ILLUMINA 10/11/2017 SRR6078300 SRS2542647 SRP118922 GSM2794427 Friedreich''s ataxia 37 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703182 GEO SRX3217741 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5171 3462 ILLUMINA 10/11/2017 SRR6078301 SRS2542648 SRP118922 GSM2794428 Friedreich''s ataxia 44 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703181 GEO SRX3217742 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 5451 3681 ILLUMINA 10/11/2017 SRR6078302 SRS2542649 SRP118922 GSM2794429 Friedreich''s ataxia 36 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703180 GEO SRX3217743 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4258 2864 ILLUMINA 10/11/2017 SRR6078303 SRS2542650 SRP118922 GSM2794430 Friedreich''s ataxia 50 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703179 GEO SRX3217744 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4362 2936 ILLUMINA 10/11/2017 SRR6078304 SRS2542651 SRP118922 GSM2794431 Friedreich''s ataxia 19 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703178 GEO SRX3217745 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4713 3167 ILLUMINA 10/11/2017 SRR6078305 SRS2542652 SRP118922 GSM2794432 Friedreich''s ataxia 28 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703177 GEO SRX3217746 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4597 3079 ILLUMINA 10/11/2017 SRR6078306 SRS2542653 SRP118922 GSM2794433 Friedreich''s ataxia 70 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703176 GEO SRX3217747 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4113 2770 ILLUMINA 10/11/2017 SRR6078307 SRS2542654 SRP118922 GSM2794434 Friedreich''s ataxia 21 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens
RNA-Seq 152 PRJNA412241 SAMN07703175 GEO SRX3217748 Illumina HiSeq 2000 PAIRED cDNA 9/26/2017 4362 2934 ILLUMINA 10/11/2017 SRR6078308 SRS2542655 SRP118922 GSM2794435 Friedreich''s ataxia 50 y fibroblasts primary skin fibroblast cells public sra ncbi 0 TRANSCRIPTOMIC Homo sapiens