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Prtl 2570 qq box viz download #2569
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* wip calculate slope from q1 and q3 * truncate data, log values to test in R * wip clip path for qqline * download tsv button * style changes, cleanup * add json download * comments
* make css selector more specific for histogram svg/png function * remove console log
* add labels to histogram json * remove console log
fix loading old set id ("deprecated set" issue @ demo day)
Currently, when combining “_missing” and any other values creates a logical error in the query.
[PRTL-2581] fix case removal of “_missing” along with other values
anncatton
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Jul 26, 2019
* PRTL-2543 add box plot table * fix ClinicalVariableCard no data errors * [PRTL-2459] Update References to Moved Properties for Pinwheel (#2516) * Changed property as described. * Updated version of tableColumns. * Changed the return value of rehydrate * Prtl 2528 biospecimen & clinical columns (#2540) * eslint change * alphabetize * add table styling * add constant for projects categories * add conditions to table headers & columns * add project link * remove comment * refactor/rename * fix typo * change file count to case count * update table version * 🐛 feature/PRTL-2550 fix small ranges (#2544) * [PRTL-2568] Remove From Set - Default to Current Cohort (#2547) * Added default set in removeSetModal; sort the list of sets. * Added highlight for selected set. * fix bug with p-value cut off in windows chrome (#2549) * [PRTL-2580] histogram download (PR #2551) * make css selector more specific for histogram svg/png function * remove console log * [PRT-2580] histogram improvements (PR #2553) * add labels to histogram json * possible fix for loading old set id * [PRTL-2581] fix case removal of “_missing” and other values Currently, when combining “_missing” and any other values creates a logical error in the query. * [PRTL-2559] Create Modal Layout for Custom Categorical Binning (#2546) * Added the GroupValuesModal and bins objects. * Created function to update the group bins. * Changed the way to get groupName * Changed the modal based on feedback. * Removed bins with empty key from customBins. * Improved onclick function of '<<' button * Create pull_request_template (#2560) * Create pull_request_template * change x-axis length from 8 to 10 (#2562) * [PRTL-2545] add box plot package * [PRTL-2582] add Synchronous Malignancy @ case entities * [PRTL-2584] add Pack Years Smoked @ case entities * [PRTL-2594] add tooltip to truncated tab label * [PRTL-2547] add publications app shortcut * [PRTL-2593] add box plot tooltips * Prtl 2570 qq box viz download (#2569) * wip using case_ssms * collect qq data points for all clinical types * reduce dropdown char limit to accommodate all caps * watch filters prop to update plot * PRTL-2537 qq slope, data download (#2548) * wip calculate slope from q1 and q3 * truncate data, log values to test in R * wip clip path for qqline * download tsv button * add json download * fix runaway qqline * fix bug with p-value cut off in windows chrome (#2550) * PRTL-2580 [bug] histogram download (#2551) * make css selector more specific for histogram svg/png function * Prtl 2580 histogram improvements (#2553) * add labels to histogram json * [PRTL-2581] fix case removal of “_missing” and other values Currently, when combining “_missing” and any other values creates a logical error in the query. * add boxplot wrapper * styling changes. fix qq resize and clip path. * increase chart heights. add scroll action on cards with no data * update boxplot package. set qq data for export. * add styles for img export. some fixes for box resizing * release/1.21.0 into develop. (#2538) * version bump. * [PRTL-2459] Update References to Moved Properties for Pinwheel (#2542) * Changed property as described. * fix api url (#2545) * fix api url * remove console.logs (#2563) * revert UNSAFE method changes (#2570) * [PRTL-2534] update schema with CIViC attributes. * [PRTL-2534] add queries and view for civic data at gene and ssms entities * 💄 enable cdave launch demo button (#2573) * 💄Feature/PRTL-2585 style set action menu (#2572) * 💄 styling for set action dropdown * default border radius for dropdowns. positioning for bin dropdown * [PRTL-2596] Binning UX/Styling Improvements (#2568) * Added the GroupValuesModal and bins objects. * Created function to update the group bins. * Changed the way to get groupName * Changed the modal based on feedback. * Removed empty line. * Removed bins with empty key from customBins. * Removed console. * Improved onclick function of '<<' button * Added style to model. * Updated the groupValuesModal. * changed the warning message; added the numbers of data in hidden value list. * Added outsideClickHandlerDisabled to false in GroupValuesModal. * Sorted the binData before displaying it. * Updated bins when setId and totalDocs number changes. * Added warning after each group name. Changed toggleEditingAndSave function in EditableLabel. * Created a new file to handle editable row in GroupValuesModal. * Removed values that equal to 0 when switch cohort. * Restored old editablelabel since I create a new one for groupvaluesmodal. * Improved types. Added cardFilters variable. * Fixed comments. * removessss extra s'ssssss (#2576) * removessss extra s'ssssss * change condition syntax * Changed reset function in groupValuesModal. (#2574) * [PRTL-2610] Fix On Switch Cohort (#2577) * Change the withPropsOnChange listener. * 🚸PRTL-2603 default analysis name (#2579) * 🚸 default analysis name to num set + 1 * update qq plot when data buckets change * [PRTL-2566] Added Range to Continuous Binning Query (#2575) * Added range in continuousAggregation. * Added analysis colors for each category of buckets. * Changed one of the color. * Assign a default value to legend in survivalplotwrapper to prevent undefined error. (#2608) * bump version * Revert "Merge pull request #2571 from NCI-GDC/feature/PRTL-2534" This reverts commit 79dfb87, reversing changes made to 83a1759. * 🐛 PRTL-2706 Fix incorrect string coercion (#2642)
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PRTL-2570, PRTL-2591
Environment to be used in testing
proddev-oicrqa(which version?)Description of Changes
Combines qq and box plot of variable card
Adds svg, png, tsv and json download for qq
Adds svg and png download for boxplot
Adds table tsv export