Build a Container for the deseq2-docker

Steps to build this docker container.

Set up GitHub Actions To build your image from the command line:

Can do this on Google shell - docker is installed and available

docker build -t deseq2 .

To test this tool from the command line

Set up an environment variable capturing your current command line:

PWD=$(pwd)

Then mount and use your current directory and call the tool now encapsulated within the environment. The input to DESeq2 is one single matrix.

docker run -it -v $PWD:$PWD -w $PWD gmsd Rscript combine-matrices.R