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@NKI-GCF

Netherlands Cancer Institute - Genomics Core Facilty

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  1. rumidup rumidup Public

    UMI aware mark (optical) duplicates in NGS sequencing BAM

    Rust 3 2

  2. gensum gensum Public

    RNA-seq reads to gene counts

    Rust 3 1

  3. featureseek featureseek Public

    QC feature barcodes in 10X Feature Barcode FastQ files

    Rust

  4. XenofilteR XenofilteR Public

    Filtering of PDX samples for mouse derived reads

    R 26 7

Repositories

Showing 10 of 18 repositories
  • rumidup Public

    UMI aware mark (optical) duplicates in NGS sequencing BAM

    NKI-GCF/rumidup’s past year of commit activity
    Rust 3 MIT 2 0 0 Updated Apr 26, 2024
  • gensum Public

    RNA-seq reads to gene counts

    NKI-GCF/gensum’s past year of commit activity
    Rust 3 MIT 1 1 1 Updated Oct 31, 2023
  • fa2b2 Public
    NKI-GCF/fa2b2’s past year of commit activity
    Rust 1 GPL-3.0 0 0 0 Updated Apr 25, 2023
  • XenofilteR Public

    Filtering of PDX samples for mouse derived reads

    NKI-GCF/XenofilteR’s past year of commit activity
    R 26 GPL-3.0 7 4 0 Updated Dec 8, 2022
  • featureseek Public

    QC feature barcodes in 10X Feature Barcode FastQ files

    NKI-GCF/featureseek’s past year of commit activity
    Rust 0 MIT 0 0 0 Updated Nov 9, 2022
  • brcaness-classifier Public
    NKI-GCF/brcaness-classifier’s past year of commit activity
    R 0 1 0 0 Updated Jan 7, 2022
  • noodles Public Forked from zaeleus/noodles

    Bioinformatics I/O libraries in Rust

    NKI-GCF/noodles’s past year of commit activity
    Rust 0 MIT 54 0 0 Updated Sep 28, 2021
  • QDNAseq Public Forked from ccagc/QDNAseq

    QDNAseq package for Bioconductor

    NKI-GCF/QDNAseq’s past year of commit activity
    R 0 27 0 0 Updated May 11, 2021
  • jquery-circle-progress Public Forked from kottenator/jquery-circle-progress

    jQuery Plugin to draw animated circular progress bars

    NKI-GCF/jquery-circle-progress’s past year of commit activity
    JavaScript 0 MIT 317 0 0 Updated Jan 4, 2021
  • itreecount Public archive

    RNAseq gene counter

    NKI-GCF/itreecount’s past year of commit activity
    Perl 0 0 0 0 Updated Jul 3, 2020
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