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    18 repositories

    • rumidup

      Public
      UMI aware mark (optical) duplicates in NGS sequencing BAM
      Rust
      •
      MIT License
      •2•3•0•0•Updated Apr 26, 2024Apr 26, 2024

    • gensum

      Public
      RNA-seq reads to gene counts
      rnaseqgeneexpression
      Rust
      •
      MIT License
      •1•3•1•1•Updated Oct 31, 2023Oct 31, 2023

    • fa2b2

      Public
      Rust
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Apr 25, 2023Apr 25, 2023

    • XenofilteR

      Public
      Filtering of PDX samples for mouse derived reads
      R
      •
      GNU General Public License v3.0
      •7•27•4•0•Updated Dec 8, 2022Dec 8, 2022

    • featureseek

      Public
      QC feature barcodes in 10X Feature Barcode FastQ files
      Rust
      •
      MIT License
      •0•0•0•0•Updated Nov 9, 2022Nov 9, 2022

    • brcaness-classifier

      Public
      R
      •1•0•0•0•Updated Jan 7, 2022Jan 7, 2022

    • noodles

      Public
      Bioinformatics I/O libraries in Rust
      Rust
      •
      MIT License
      •52•0•0•0•Updated Sep 28, 2021Sep 28, 2021

    • QDNAseq

      Public
      QDNAseq package for Bioconductor
      R
      •27•0•0•0•Updated May 11, 2021May 11, 2021

    • jquery-circle-progress

      Public
      jQuery Plugin to draw animated circular progress bars
      JavaScript
      •
      MIT License
      •312•0•0•0•Updated Jan 4, 2021Jan 4, 2021

    • itreecount

      Public archive
      RNAseq gene counter
      Perl
      •0•0•0•0•Updated Jul 3, 2020Jul 3, 2020

    • vim-toml

      Public
      Vim syntax for TOML
      Vim Script
      •
      MIT License
      •40•0•0•0•Updated Mar 14, 2019Mar 14, 2019

    • LOHHLA

      Public
      Fork of https://bitbucket.org/mcgranahanlab/lohhla
      R
      •9•0•0•0•Updated Oct 4, 2018Oct 4, 2018

    • Metrix

      Public archive
      A Server / Client parser for Illumina InterOp sequencer run metrics.
      Java
      •
      Other
      •5•10•2•0•Updated Sep 25, 2016Sep 25, 2016

    • SeqCNV

      Public
      Copy number analysis from low coverage sequence data
      R
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Aug 19, 2016Aug 19, 2016

    • xcalibr

      Public
      **xcalibr** - eXtracting Counting And LInking to Barcode References
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 16, 2015Dec 16, 2015

    • jjv

      Public
      Javascript Library for Schema Validation
      JavaScript
      •
      MIT License
      •35•0•0•0•Updated Apr 28, 2015Apr 28, 2015

    • jake

      Public
      JavaScript build tool, similar to Make or Rake. Built to work with Node.js.
      JavaScript
      •
      Apache License 2.0
      •190•0•0•0•Updated Dec 8, 2014Dec 8, 2014

    • b6

      Public
      convert ascii DNA/RNA to rotated 2bit
      C
      •0•0•0•0•Updated Jul 13, 2013Jul 13, 2013