restore test_gdasapp_atm_jjob functionality (#981)

`test_gdasapp_atm_jjob` tests fail due to inconsistencies between the
GDASApp tests and recent g-w updates. This PR restores _Passed_ result
for `test_gdasapp_atm_jjob`.

Fixes #980

test/atm/global-workflow/config.atmanl

@@ -5,25 +5,29 @@
 
 echo "BEGIN: config.atmanl"
 
+export OBS_LIST=@OBS_LIST@
+export JEDIYAML="${PARMgfs}/gdas/atm/variational/3dvar_drpcg.yaml.j2"
+export STATICB_TYPE=@STATICB_TYPE@
+export INTERP_METHOD='barycentric'
+
 if [[ ${DOHYBVAR} = "YES" ]]; then
     # shellcheck disable=SC2153
     export CASE_ANL=${CASE_ENS}
+    export BERROR_YAML="${PARMgfs}/gdas/atm/berror/hybvar_${STATICB_TYPE}.yaml.j2"
 else
     export CASE_ANL=${CASE}
+    export BERROR_YAML="${PARMgfs}/gdas/atm/berror/staticb_${STATICB_TYPE}.yaml.j2"
 fi
-export OBS_LIST=@OBS_LIST@
-export JEDIYAML="${HOMEgfs}/parm/gdas/atm/variational/3dvar_drpcg.yaml.j2"
-export STATICB_TYPE="identity"
-export BERROR_YAML="${HOMEgfs}/parm/gdas/atm/berror/staticb_${STATICB_TYPE}.yaml.j2"
-export INTERP_METHOD='barycentric'
+
+export CRTM_FIX_YAML="${PARMgfs}/gdas/atm_crtm_coeff.yaml.j2"
+export JEDI_FIX_YAML="${PARMgfs}/gdas/atm_jedi_fix.yaml.j2"
 
 export layout_x_atmanl=@LAYOUT_X_ATMANL@
 export layout_y_atmanl=@LAYOUT_Y_ATMANL@
 
 export io_layout_x=@IO_LAYOUT_X@
 export io_layout_y=@IO_LAYOUT_Y@
 
-export JEDIEXE=${HOMEgfs}/exec/fv3jedi_var.x
-export crtm_VERSION="2.4.0"
+export JEDIEXE=${EXECgfs}/fv3jedi_var.x
 
 echo "END: config.atmanl"

test/atm/global-workflow/config.atmensanl

@@ -6,15 +6,18 @@
 echo "BEGIN: config.atmensanl"
 
 export OBS_LIST=@OBS_LIST@
-export JEDIYAML="${HOMEgfs}/parm/gdas/atm/lgetkf/lgetkf.yaml.j2"
+export JEDIYAML="${PARMgfs}/gdas/atm/lgetkf/lgetkf.yaml.j2"
 export INTERP_METHOD='barycentric'
 
+export CRTM_FIX_YAML="${PARMgfs}/gdas/atm_crtm_coeff.yaml.j2"
+export JEDI_FIX_YAML="${PARMgfs}/gdas/atm_jedi_fix.yaml.j2"
+
 export layout_x_atmensanl=@LAYOUT_X_ATMENSANL@
 export layout_y_atmensanl=@LAYOUT_Y_ATMENSANL@
 
 export io_layout_x=@IO_LAYOUT_X@
 export io_layout_y=@IO_LAYOUT_Y@
 
-export JEDIEXE=${HOMEgfs}/exec/fv3jedi_letkf.x
+export JEDIEXE=${EXECgfs}/fv3jedi_letkf.x
 
 echo "END: config.atmensanl"

test/atm/global-workflow/config.yaml

@@ -1,22 +1,21 @@
 base:
   HOMEgfs: "@topdir@"
+  DOHYBVAR: "NO"
   DO_JEDIATMVAR: "YES"
   DO_JEDIATMENS: "YES"
   DATAPATH: "@bindir@/test/atm/global-workflow/testrun"
   DUMPDIR: "@dumpdir@"
   STMP: "@bindir@/test/atm/global-workflow/testrun"
   PTMP: "@bindir@/test/atm/global-workflow/testrun"
+
 atmanl:
   OBS_LIST: "@srcdir@/test/atm/global-workflow/gdas_prototype.yaml.j2"
+  STATICB_TYPE: "identity"
   ATMRES_ANL: "C48"
   LAYOUT_X_ATMANL: 1
   LAYOUT_Y_ATMANL: 1
-  IO_LAYOUT_X: 1
-  IO_LAYOUT_Y: 1
 
 atmensanl:
   OBS_LIST: "@srcdir@/test/atm/global-workflow/lgetkf_prototype.yaml.j2"
   LAYOUT_X_ATMENSANL: 1
   LAYOUT_Y_ATMENSANL: 1
-  IO_LAYOUT_X: 1
-  IO_LAYOUT_Y: 1