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Add in initial 3DVar aerosol DA cycling capability #1106

Merged
merged 132 commits into from
Feb 10, 2023
Merged

Add in initial 3DVar aerosol DA cycling capability #1106

merged 132 commits into from
Feb 10, 2023

Commits on Aug 23, 2022

  1. Update rocoto scripts to call j-jobs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 23, 2022
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  2. touch j-jobs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 23, 2022
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  3. touch ex-scripts

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 23, 2022
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Commits on Aug 24, 2022

  1. Update j-jobs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 24, 2022
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Commits on Aug 25, 2022

  1. set STRICT to NO

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 25, 2022
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Commits on Aug 29, 2022

  1. Start of initialize script

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 29, 2022
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  2. Dummy ex-scripts

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 29, 2022
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  3. Merge branch 'develop' into feature/aeroda_jobs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 29, 2022
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Commits on Aug 31, 2022

  1. Make all aeroanl jobs use same data dir

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 31, 2022
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  2. Start of initialize script

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Aug 31, 2022
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Commits on Sep 2, 2022

  1. Incremental commit

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 2, 2022
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  2. Just save to go talk

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 2, 2022
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  3. Cleanup classes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 2, 2022
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Commits on Sep 6, 2022

  1. Incremental change

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  2. incremental update

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  3. Fix paths in j-jobs for aero scripts

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  4. Remove pythonpath and print

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  5. More changes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  6. bugfix to get it to work hopefully

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  7. fix logging information

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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  8. Change prints to passes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 6, 2022
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Commits on Sep 8, 2022

  1. Update gdasapp commit; typo fix in parm config; progress towards stag… 

    …ing obs
    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 8, 2022
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Commits on Sep 9, 2022

  1. working copy of obs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 9, 2022
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  2. Update fix file path for aeroanl

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 9, 2022
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  3. Changes to config.aeroanl; working ob/bkg copy; to test yaml write

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 9, 2022
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  4. Lots of changes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 9, 2022
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  5. Add doc header

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 9, 2022
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Commits on Sep 11, 2022

  1. Add NPOESS VIS files to copy

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 11, 2022
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Commits on Sep 12, 2022

  1. Update finalize ex script

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 12, 2022
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  2. Update analysis task

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 12, 2022
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Commits on Sep 15, 2022

  1. fix config.aeroanl

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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  2. incremental update

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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  3. Save before lunch

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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  4. Save diags to rotdir

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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  5. Copy YAML file to rotdir

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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  6. End of day commit

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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  7. Fix missing cdate_fv3

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Sep 15, 2022
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Commits on Oct 20, 2022

  1. Changes to workflow to include staticB matrices

    Andrew Tangborn authored and Andrew Tangborn committed Oct 20, 2022
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Commits on Oct 31, 2022

  1. Changes to workflow to include aero DA with static-B

    Andrew Tangborn authored and Andrew Tangborn committed Oct 31, 2022
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Commits on Nov 1, 2022

  1. Update gdasapp hashes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 1, 2022
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  2. Merge branch 'develop' of https://github.com/noaa-emc/global-workflow … 

    …into feature/aeroda_staticb_crm
    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 1, 2022
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  3. Some minor things to get cycling going

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 1, 2022
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  4. Update hash for gdasapp

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 1, 2022
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Commits on Nov 2, 2022

  1. Some small changes to analysis.py

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 2, 2022
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  2. Generalize jobs to load modules on hera and orion

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 2, 2022
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  3. Support identity B for aero

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 2, 2022
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  4. Update gdasapp hash

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 2, 2022
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Commits on Nov 3, 2022

  1. Attempt to fix linter issues for one file

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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  2. another linter check

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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  3. More linter

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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  4. Linter done for two J-jobs before lunch

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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  5. More linter changes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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  6. more linter stuff

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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  7. more linter again

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 3, 2022
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Commits on Nov 7, 2022

  1. Address reviewer comments by @RussTreadon-NOAA

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Nov 7, 2022
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Commits on Dec 2, 2022

  1. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  2. Fix known bugs before review comments are addressed

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  3. make aerosol da a dependency of fcst if cycling and using aerosols

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  4. Typo

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  5. Separate out subclasses

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  6. cleanup the ex scripts

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  7. update commit hash for gdasapp

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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  8. More tidying up before addressing classes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 2, 2022
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Commits on Dec 7, 2022

  1. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  2. move gfs module to python/pygfs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  3. Modify rocoto jobs to set PYTHONPATH

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  4. Modify j-jobs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  5. lint roller

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  6. Incremental save before meeting

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  7. test for debugging gdasapp

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  8. Remove py header docstring and change to pygfs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  9. Dumb thing just to confirm ci test is working

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  10. Save before merge

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  11. Merge branch 'feature/aeroda_staticb_crm' of https://github.com/NOAA-… 

    …EMC/global-workflow into feature/aeroda_staticb_crm
    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  12. Start of yaml based copy for stage

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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  13. Create aero_jedi_fix.yaml

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 7, 2022
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Commits on Dec 9, 2022

  1. remove changes from fsutils

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 9, 2022
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  2. Incremental save

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 9, 2022
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  3. Friday afternoon save

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 9, 2022
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  4. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 9, 2022
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Commits on Dec 13, 2022

  1. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 13, 2022
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  2. Changes to aerosol tasks

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 13, 2022
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  3. Update aero_analysis.py

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 13, 2022
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Commits on Dec 14, 2022

  1. init works; waiting on run to get through queue

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 14, 2022
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  2. save before pycodestyle

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 14, 2022
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  3. pycodestyle

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 14, 2022
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  4. pycodestyle part deux

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 14, 2022
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  5. fix where aprun will not work properly in quotes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 14, 2022
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Commits on Dec 15, 2022

  1. Save before merge

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 15, 2022
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  2. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 15, 2022
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  3. Change j-jobs

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 15, 2022
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  4. add RUN

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Dec 15, 2022
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  5. Update jobs/JGDAS_GLOBAL_AERO_ANALYSIS_INITIALIZE 

    Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
    @CoryMartin-NOAA @aerorahul
    CoryMartin-NOAA and aerorahul committed Dec 15, 2022
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Commits on Jan 20, 2023

  1. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 20, 2023
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  2. Changes to address some reviewer comments

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 20, 2023
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  3. Update to gdasapp hash right before ioda naming convention change

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 20, 2023
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  4. Use the j-job header properly

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 20, 2023
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Commits on Jan 25, 2023

  1. Minor fixes to get cycling working on hera

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  2. make the linter happy

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  3. make the python linter happy too

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  4. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  5. reviewer comments

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  6. more lint

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  7. Make aero static B more generic

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  8. Add brief documentation for each ex-script

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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  9. Minor thing

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 25, 2023
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Commits on Jan 26, 2023

  1. JGDAS_GLOBAL to JGLOBAL

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 26, 2023
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  2. a few updates after the discussion

    @aerorahul
    aerorahul committed Jan 26, 2023
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Commits on Jan 27, 2023

  1. Make some little tweaks

    @aerorahul
    aerorahul committed Jan 27, 2023
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  2. use task_config in the class

    @aerorahul
    aerorahul committed Jan 27, 2023
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  3. Merge branch 'feature/aeroda_staticb_crm' into patch/aeroda_staticb_crm

    @aerorahul
    aerorahul committed Jan 27, 2023
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  4. no need for the configure method

    @aerorahul
    aerorahul committed Jan 27, 2023
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Commits on Jan 30, 2023

  1. Merge pull request #1288 from aerorahul/patch/aeroda_staticb_crm 

    patch to aeroda_static_crm
    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 30, 2023
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  2. PEP8 changes

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 30, 2023
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  3. Add workflow env to build; fix some minor issues

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 30, 2023
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  4. Merge branch 'feature/aeroda_staticb_crm' of https://github.com/NOAA-… 

    …EMC/global-workflow into feature/aeroda_staticb_crm
    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 30, 2023
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  5. end of day commit

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Jan 30, 2023
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Commits on Feb 6, 2023

  1. Save to push

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  2. make get_bkg and get_berror generic to all analyses

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  3. Find ones self

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  4. init job runs again

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  5. leading zeros

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  6. Working now need to clean up

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  7. Consolidate BUMP file list generation; use tileX syntax

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  8. Starting to lint trap

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  9. Merge branch 'develop' into feature/aeroda_staticb_crm

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  10. Add documentation; make incvars a YAML

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  11. pycodestyle again

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  12. Update analysis.py

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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  13. Update analysis.py

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 6, 2023
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Commits on Feb 7, 2023

  1. Apply suggestions from code review 

    Co-authored-by: Rahul Mahajan <aerorahul@users.noreply.github.com>
    @CoryMartin-NOAA @aerorahul
    CoryMartin-NOAA and aerorahul committed Feb 7, 2023
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  2. Fix PYTHONPATH

    @CoryMartin-NOAA
    CoryMartin-NOAA committed Feb 7, 2023
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