Feature/gfsv16b paranetcdf

modulefiles/fv3gfs/enkf_chgres_recenter.wcoss_dell_p3

@@ -5,11 +5,15 @@
 module load ips/18.0.1.163
 module load impi/18.0.1
 
-module load NetCDF/4.5.0
 module load nemsio/2.2.3
 module load bacio/2.0.2
 module load w3nco/2.0.6
 module load ip/3.0.1
 module load sp/2.0.2
 
+module use /usrx/local/nceplibs/dev/NCEPLIBS/modulefiles
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+
+
 export FC=ifort

modulefiles/fv3gfs/enkf_chgres_recenter_nc.hera

@@ -1,12 +1,14 @@
 #%Module#####################################################
 ## enkf_chgres_recenter component - hera
 #############################################################
-module load netcdf/4.6.1
 
 module use -a /scratch2/NCEPDEV/nwprod/NCEPLIBS/modulefiles
 module load bacio/2.0.2
 module load w3nco/2.0.6
 module load ip/3.0.1
 module load sp/2.0.2
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+
 
 export FC=ifort

modulefiles/fv3gfs/enkf_chgres_recenter_nc.wcoss_dell_p3

@@ -5,10 +5,15 @@
 module load ips/18.0.1.163
 module load impi/18.0.1
 
-module load NetCDF/4.5.0
+#module load NetCDF/4.5.0
 module load bacio/2.0.2
 module load w3nco/2.0.6
 module load ip/3.0.1
 module load sp/2.0.2
 
+module use /usrx/local/nceplibs/dev/NCEPLIBS/modulefiles
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+
+
 export FC=ifort

modulefiles/fv3gfs/gaussian_sfcanl.hera

@@ -2,14 +2,14 @@
 ## gaussian_sfcanl build module for Hera
 #############################################################
 
-module load netcdf/4.7.0
-module load hdf5/1.10.5
-
 module use -a /scratch2/NCEPDEV/nwprod/NCEPLIBS/modulefiles
 module load w3nco/2.0.6
 module load bacio/2.0.2
 module load nemsio/2.2.3
 module load sp/2.0.2
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+
 
 export NETCDF_INCLUDE="-I${NETCDF}/include"
 export NETCDF_LDFLAGS_F="-L${NETCDF}/lib -lnetcdf -lnetcdff -L${HDF5}/lib -lhdf5 -lhdf5_fortran"

modulefiles/fv3gfs/gaussian_sfcanl.wcoss_dell_p3

@@ -8,11 +8,13 @@ set ver v15.0.0
 module load ips/18.0.1.163
 module load impi/18.0.1
 
-module load NetCDF/4.5.0
-module load HDF5-serial/1.10.1
 module load nemsio/2.2.3
 module load w3nco/2.0.6
 module load bacio/2.0.2
 module load sp/2.0.2
 
+module use /usrx/local/nceplibs/dev/NCEPLIBS/modulefiles
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+
 export FCOMP=ifort

modulefiles/module_base.hera

@@ -7,22 +7,21 @@ module load intel/18.0.5.274
 module load impi/2018.0.4
 module load wgrib2/2.0.8
 module load hpss/hpss
-module load pnetcdf/1.10.0
-module load netcdf/4.7.0
 module load nco/4.7.0
-module load hdf5/1.10.5
 module load gempak/7.4.2
 
+module use /scratch2/NCEPDEV/nwprod/NCEPLIBS/modulefiles
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+module load esmf/8.0.0_ParallelNetCDF 
+
 #Load from official NCEPLIBS
 module use -a /scratch2/NCEPDEV/nwprod/NCEPLIBS/modulefiles
 module load g2tmpl/1.6.0
 module load grib_util/1.1.1
 module load crtm/2.2.6
 module load prod_util/1.1.0
 
-module use -a /scratch1/NCEPDEV/nems/emc.nemspara/soft/modulefiles
-module load esmf/8.0.0bs48
-
 # python
 module use -a /contrib/modulefiles
 module load anaconda/2.3.0

modulefiles/module_base.wcoss_dell_p3

@@ -17,19 +17,22 @@ module unload grib_util/1.0.6
 module load grib_util/1.1.0
 
 module load NCO/4.7.0   
-module load HDF5-serial/1.10.1
-module load NetCDF/4.5.0
 module load CFP/2.0.1
 setenv USE_CFP YES
-
-# modules used by vrfy
 module load pm5
 
+#module load HDF5-serial/1.10.1
+#module load NetCDF/4.5.0
+module use /usrx/local/nceplibs/dev/NCEPLIBS/modulefiles
+module load hdf5_parallel/1.10.6
+module load netcdf_parallel/4.7.4
+module load esmf/8.0.0_ParallelNetCDF
+
 module use -a /gpfs/dell1/nco/ops/nwprod/modulefiles/
 module load gempak/7.3.1
 
-module use /gpfs/dell2/emc/modeling/noscrub/emc.nemspara/soft/modulefiles
-module load esmf/8.0.0bs48
+#module use /gpfs/dell2/emc/modeling/noscrub/emc.nemspara/soft/modulefiles
+#module load esmf/8.0.0bs48
 
 # python
 module load python/3.6.3

parm/config/config.anal

@@ -21,17 +21,28 @@ fi
 
 export ANALYSISSH="$HOMEgsi/scripts/exglobal_analysis_fv3gfs.sh.ecf"
 export npe_gsi=$npe_anal
-export LEVS_ENKF=$((LEVS-1))
+
+# Set parameters specific to L127
+if [ $LEVS = "128" ]; then
+    export GRIDOPTS="nlayers(63)=1,nlayers(64)=1,"
+    export SETUP="gpstop=55,nsig_ext=56,$SETUP"
+fi
+
+# Set namelist option for LETKF
+export lobsdiag_forenkf=".false."  # anal does not need to write out jacobians
+                                   # set to .true. in config.eobs and config.eupd
+
+if [ $OUTPUT_FILE = "nemsio" ]; then
+    export DO_CALC_INCREMENT="YES"
+    export DO_CALC_ANALYSIS="NO"
+fi
 
 # Do not process the following datasets
 export GSNDBF=${GSNDBF:-/dev/null}
 export AMSREBF=${AMSREBF:-/dev/null}
 export SSMITBF=${SSMITBF:-/dev/null}
 export AMSR2BF=${AMSR2BF:-/dev/null}
 
-# Set directory and structure for COMIN_OBS
-export COMIN_OBS="$DMPDIR/${CDUMP}${DUMP_SUFFIX}.${PDY}/${cyc}"
-
 # Set CONVINFO and SATINFO for retrospective parallels
 if [ $REALTIME = "NO" ]; then
 
@@ -53,7 +64,11 @@ if [ $REALTIME = "NO" ]; then
     fi
 
 #   Set OZINFO
-    if [[ "$CDATE" -ge "2018110700" ]]; then
+    if [[ "$CDATE" -ge "2020011806" ]]; then
+        export OZINFO=$FIXgsi/fv3_historical/global_ozinfo.txt.2020011806
+    elif [[ "$CDATE" -ge "20200116000" ]]; then
+	export OZINFO=$FIXgsi/fv3_historical/global_ozinfo.txt.2020011600
+    elif [[ "$CDATE" -ge "2018110700" ]]; then
         export OZINFO=$FIXgsi/fv3_historical/global_ozinfo.txt.2018110700
     elif [[ "$CDATE" -ge "2015110500" ]]; then
         export OZINFO=$FIXgsi/fv3_historical/global_ozinfo.txt.2015110500
@@ -93,9 +108,25 @@ if [ $REALTIME = "NO" ]; then
     fi
 fi
 
-if [ $LEVS = "128" ]; then
-   export GRIDOPTS="nlayers(63)=1,nlayers(64)=1,"
-   export SETUP="gpstop=55,nsig_ext=56,$SETUP"
+# Use experimental dumps in GFS v16 parallels
+export ABIBF="/dev/null"
+if [[ "$CDATE" -ge "2019022800" ]] ; then
+    export ABIBF="$DMPDIR/${CDUMP}x.${PDY}/${cyc}/${CDUMP}.t${cyc}z.gsrcsr.tm00.bufr_d"
+    if [[ "$CDATE" -ge "2019111000" ]]; then
+	export ABIBF="$DMPDIR/${CDUMP}y.${PDY}/${cyc}/${CDUMP}.t${cyc}z.gsrcsr.tm00.bufr_d"
+    fi
+fi
+
+export AHIBF="/dev/null"
+if [[ "$CDATE" -ge "2019042300" ]]; then
+    export AHIBF="$DMPDIR/${CDUMP}x.${PDY}/${cyc}/${CDUMP}.t${cyc}z.ahicsr.tm00.bufr_d"
 fi
 
+
+# Turn off assmilation of OMPS during period of bad data
+if [[ "$CDATE" -ge "2020011600" && "$CDATE" -lt "2020011806" ]]; then
+    export OZINFO=/gpfs/dell2/emc/modeling/noscrub/emc.glopara/para_fv3gfs/v16rt2/global_ozinfo.txt
+fi
+
+
 echo "END: config.anal"