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The archival step was updated to be ready for prototype runs again. Most of the archival step for coupling was not updated after merging in the develop branch to feature/coupled-crow.
This has been tested independently by @LydiaStefanova-NOAA on hera:
COM: /scratch1/NCEPDEV/stmp2/Lydia.B.Stefanova/P6-workflow-coupled/COMROOT
HPSS archive: /NCEPDEV/emc-climate/1year/Lydia.B.Stefanova/HERA/scratch/test2d_archive/2013040100