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[cudamapper] Filtering for self mappings, identical overlaps, and highly-similar overlaps #563

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[cudamapper] Filtering for self mappings, identical overlaps, and highly-similar overlaps #563

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Commits on Sep 17, 2020

  1. [cudamapper] Implement full-length match filtering for self mappings. 

    Adds a post-processing filter for full-length self mappings. This is
needed as self mappings cause miniasm to produce empty assemblies.
    @edawson
    edawson committed Sep 17, 2020
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  2. [cudamapper] Lower the threshold for self mapping from 0.95 to 0.9.

    @edawson
    edawson committed Sep 17, 2020
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  3. [cudamapper] Implement identity / percent reciprocity filtering of ov… 

    …erlaps in

postprocessing.

Adds a CLI option and functions for filtering overlaps that either have
identical query starts/ends or which have a percent reciprocal identity
greater than a user-defined threshold.
    @edawson
    edawson committed Sep 17, 2020
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Commits on Sep 29, 2020

  1. Merge branch 'dev-v0.6.0' into reciprocal-filter

    @edawson
    edawson committed Sep 29, 2020
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Commits on Oct 10, 2020

  1. Merge branch 'dev-v0.6.0' into reciprocal-filter

    @edawson
    edawson committed Oct 10, 2020
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