IonQuant out of bounds

[StephenHol]

Hello,
Thank you so much for Fragpipe.
I am trying to run some SILAC data using Fragpipe v21.1 I am now able to do open search fine now. But when i try to search my data set to get quant data I keep encountering this error:

2024-04-19 15:40:45 [INFO] - Combining experiments and estimating protein intensity...
java.lang.ArrayIndexOutOfBoundsException: Index -29001 out of bounds for length 29662
at r.a(Unknown Source)
at r.(Unknown Source)
at ionquant.IonQuant.main(Unknown Source)
2024-04-19 15:40:51 [ERROR] - Index -29001 out of bounds for length 29662
Process 'IonQuant' finished, exit code: 1
Process returned non-zero exit code, stopping

Cancelling 1 remaining tasks

I have attached the log from the most recent run. Any help or guidance would be greatly appreciated. 
[log_2024-04-19_15-40-51.txt](https://github.com/Nesvilab/FragPipe/files/15042421/log_2024-04-19_15-40-51.txt)

best wishes, 
Stephen 

[fcyu]

It is a known bug: #1387

Could you send an email to yufeATumich.edu (replace AT with @) to get the fixed version?

Thanks,

Fengchao

[StephenHol]

Okay no worries at all. Thank you so much!