ptmshepherd

[animesh]

Any suggestions on how to invoke ptmshepherd via PD-node? I am guessing the "scripting node" might be of avail here but the parameters

need that tsv which i am unable to locate in the temp file created for the run Z:\PA\New Study 2\temp2358 :(

[anesvi]

PD node is limited to MSFragger and PeptideProphet. You need to run FragPipe instead. Alexey

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Sent from my iPhone On Aug 4, 2020, at 8:23 AM, Ani <notifications@github.com> wrote:  External Email - Use Caution Any suggestions on how to invoke ptmshepherd via PD-node? I am guessing the "scripting node" might be of avail here but the parameters [image]<https://user-images.githubusercontent.com/21457/89293016-87fc8f80-d65d-11ea-8316-78c97e997e89.png> need that tsv which i am unable to locate in the temp file created for the run Z:\PA\New Study 2\temp2358 :( — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#9>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AIIMM64LOJBGO4U6YMAFM7TR674KPANCNFSM4PUK5Y2Q>. ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues